CS379C: Computational Models of the Neocortex

Spring 2017

Invited Talks


[1]   A. Paul Alivisatos, Anne M. Andrews, Edward S. Boyden, Miyoung Chun, George M. Church, Karl Deisseroth, John P. Donoghue, Scott E. Fraser, Jennifer Lippincott-Schwartz, Loren L. Looger, Sotiris Masmanidis, Paul L. McEuen, Arto V. Nurmikko, Hongkun Park, Darcy S. Peterka, Clay Reid, Michael L. Roukes, Axel Scherer, Mark Schnitzer, Terrence J. Sejnowski, Kenneth L. Shepard, Doris Tsao, Gina Turrigiano, Paul S. Weiss, Chris Xu, Rafael Yuste, and Xiaowei Zhuang. Nanotools for neuroscience and brain activity mapping. ACS Nano, 7(3):1850–1866, 2013.

[2]   A. Paul Alivisatos, Miyoung Chun, George M. Church, Ralph J. Greenspan, Michael L. Roukes, and Rafael Yuste. The brain activity map project and the challenge of functional connectomics. Neuron, 74, 2012.

[4]   R.P.J. Barretto and M.J. Schnitzer. In vivo optical microendoscopy for imaging cells lying deep within live tissue. Cold Spring Harbor Protocols, 2012(10), 2012.

[5]   K.L. Briggman and D.D. Bock. Current opinion neurobiology. Volume electron microscopy for neuronal circuit reconstruction, 22:154–61, 2012.

[6]   K.L. Briggman, M. Helmstaedter, and W. Denk. Wiring specificity in the direction-selectivity circuit of the retina. Nature, 471:183–188, 2011.

[7]   E.M. Callaway. Transneuronal circuit tracing with neurotropic viruses. Current Opinion Neurobiology, 18(6):617–23, 2008.

[8]   D. D. Cox, A. M. Papanastassiou, D. Oreper, B. B. Andken, and J. J. DiCarlo. High-resolution three-dimensional microelectrode brain mapping using stereo microfocal x-ray imaging. Journal of Neurophysiology, 100(5):2966–2976, 2008.

[9]   James J. DiCarlo and David D. Cox. Untangling invariant object recognition. Trends in Cognitive Sciences, 11(8):333–341, 2007.

[10]   James J DiCarlo, Davide Zoccolan, and Nicole C Rust. How does the brain solve visual object recognition? Neuron, 73:415–34, 2012.

[11]   Michael Hawrylycz, Richard A. Baldock, Albert Burger, Tsutomu Hashikawa, G. Allan Johnson, Maryann E. Martone, Lydia Ng, Christopher Lau, Stephen D. Larson, Jonathan Nissanov, Luis Puelles, Seth Ruffins, Fons Verbeek, Ilya Zaslavsky, and Jyl Boline. Digital atlasing and standardization in the mouse brain. PLoS Computational Biology, 7, 2011.

[12]   Heng Huang, Savas Delikanli, Hao Zeng, Denise M. Ferkey, and Arnd Pralle. Remote control of ion channels and neurons through magnetic-field heating of nanoparticles. Nature Nanonotechnology, 5:602–606, 2010.

[13]   Eugene M. Izhikevich and Gerald M. Edelman. Large-scale model of mammalian thalamo-cortical systems. Proceedings of the National Academy of Science, 105(9):3593–3598, 2008.

[14]   Konrad Kording. Of toasters and molecular ticker tapes. PLoS Computational Biology, 7(12):e1002291, 2011.

[15]   Mo Li, W. H. P. Pernice, C. Xiong, T. Baehr-Jones, M. Hochberg, and H. X. Tang. Harnessing optical forces in integrated photonic circuits. Nature, 456:480–484, 2008.

[16]   Jesse D. Marshall and Mark J. Schnitzer. Optical strategies for sensing neuronal voltage using quantum dots and other semiconductor nanocrystals. ACS Nano, 7:4601–4609, 2013.

[17]   J.H. Marshel, T. Mori, K.J. Nielsen, and E.M. Callaway. Targeting single neuronal networks for gene expression and cell labeling in vivo. Neuron, 67(4):562–574, 2010.

[18]   Kristina D. Micheva and Stephen J. Smith. Array tomography: A new tool for imaging the molecular architecture and ultrastructure of neural circuits. Neuron, 55(1):25–36, 2007.

[19]   Nancy A. O’Rourke, Nicholas C. Weiler, Kristina D. Micheva, and Stephen J. Smith. Deep molecular diversity of mammalian synapses: Why it matters and how to measure it. Nature Review Neuroscience, 10:365–379, 2012.

[20]   A.S. Sadek, R.B. Karabalin, J. Du, M.L. Roukes, C. Koch, and S.C. Masmanidis. Wiring nanoscale biosensors with piezoelectric nanomechanical resonators. Nano Letters, 10:1769–1773, 2010.

[21]   Susan Sunkin, Lydia Ng, Christopher Lau, Tim Dolbeare, Terri L. Gilbert, Carol L. Thompson, Michael Hawrylycz, and Chinh Dang. Allen brain atlas: an integrated spatio-temporal portal for exploring the central nervous system. Nucleic Acids Research, 41:996–1008, 2013.

[22]   B.A. Wandell and J.D. Yeatman. Biological development of reading circuits. Current Opinion Neurobiology, 23:261–268, 2013.

[23]   Brian A. Wandell, Serge O. Dumoulin, and Alyssa A. Brewer. Visual field maps in human cortex. Neuron, 56(2):366–383, 2007.

[24]   Anthony M. Zador, Joshua Dubnau, Hassana K. Oyibo, Huiqing Zhan, Gang Cao, and Ian D. Peikon. Sequencing the connectome. PLoS Biology, 10(10):e1001411, 2012.

[25]   Bradley Michael Zamft, Adam H. Marblestone, Konrad Kording, Daniel Schmidt, Daniel Martin-Alarcon, Keith Tyo, Edward S. Boyden, and George Church. Measuring cation dependent DNA polymerase fidelity landscapes by deep sequencing. PLoS ONE, 7(8):e43876, 2012.