| KEGGPkgbuilder {AnnBuilder} | R Documentation |
This function generates a data package with rda files mapping KEGG pathway or enzyme names to ids and vice versa. The source files for making the mapping are from the Internet.
KEGGPkgBuilder(pkgPath, pkgName = "KEGG", version = "1.0.1", pathwayURL
= getKEGGFile("path"), enzymeURL = getKEGGFile("enzyme"), force = TRUE,
author = c(name = "who", address = "who@email.com"))
getEIdNName(enzymeURL)
getKEGGFile(whichOne)
pkgPath |
A character string for the name of path to which the data package will be stored. |
pkgName |
A character string for the name of the data package. |
version |
A character string for the version number of the system by which the data package is generated. |
fromWeb |
A boolean to indicate whether the source file fill be from the web or a default local directory. |
pathwayURL |
A character string for the URL where the source file for pathway data will be downloaded. |
enzymeURL |
A character string for the URL from which the source file for enzyme data will be downloaded. |
force |
A boolean to indicate whether the existing data package will be over written. |
whichOne |
A charcter string for the name of file type. Valid values include "path" or "enzyme" |
author |
A list of character strings with one element being name for the name of the author and another being address being the email address of the author |
The data package produced will have the normal structure of an R package (i. g. with R, man, data, and src directories) under a directory defined by pkgName under pkgPath.
This function does not return any value.
This function is part of the Bioconductor project at Dana-Farber Cancer Institute to provide Bioinformatics functionalities through R.
Jianhua Zhang
An Introduction to R - Writting R Extensions.
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