print.ABQCList {AnnBuilder} | R Documentation |
Prints the quality control results for a given data package in a
nice format
Description
AnnBuilder has a function (getDPStats
) that generates
some statistical data (a list) for a givan data package for quality control
purpose. print.ABQCList prints the results in a more readable format.
Usage
print.ABQCList(x, ...)
Arguments
x |
x A list object of class ABQCList that is generated by
function getDPStats |
... |
... Other data to be included (not implemented
currently) |
Details
The list object contains the following elements:
nameA character string for the name of an rda file
builtA character string for a date
probeNumAn integer for the total number of probes in a given
base file
numMissMatchA vector of character strings for names of rda
files whose total number of probes do not match that of a given base
file
probeMissMatchA vector of character strings for names of rda
files whose probes do not match what are in a given base file
probeMappedA vector of named integers for the total number of
probes in a probe based rda file that have been mapped to data from
public data sources. Names of the integers are the names of the rda files
otherMappedA vector of named integers for the total number of
probes in a non-probe based rda file that have been mapped to data
from public data sources. Names of the intergers are the names of
the rda files
Value
No values are returned
Note
This function is only used for building data packages
Author(s)
Jianhua Zhang
See Also
getDPStats
Examples
# Create a ABQCList
x <- c(12250, 7800)
names(x) <- c("file1", "file2")
y <- c(2300, 3456)
names(y) <- c("file3", "file4")
aList <- list(name = "a test", built = date(), probeNum = 12250,
numMissMatch = c("file3", "file4"), probeMissMatch = "file2", probeMapped = x,
otherMapped = y)
class(aList) <- "ABQCList"
aList