\Header{getSrcBuilt}{Functions that get the built date or number of the source data
used for annotation}
\alias{getGOBuilt}{getSrcBuilt}
\alias{getKEGGBuilt}{getSrcBuilt}
\alias{getLLBuilt}{getSrcBuilt}
\alias{getUCSCBuilt}{getSrcBuilt}
\alias{getUGBuilt}{getSrcBuilt}
\alias{getYGBuilt}{getSrcBuilt}
\keyword{datasets}{getSrcBuilt}
\begin{Description}\relax
Given a data source name and organism, the built date or number of the
annotation source data will be returned. The built date or number is
provided by the data source through its web site.\end{Description}
\begin{Usage}
\begin{verbatim}
getSrcBuilt(src = "LL", organism = "human")
getLLBuilt(url = "http://www.ncbi.nlm.nih.gov/LocusLink/statistics.html")
getUGBuilt(organism, url = "ftp://ftp.ncbi.nih.gov/repository/UniGene")
getUCSCBuilt(organism)
getGOBuilt(url = "http://www.godatabase.org/dev/database/archive/latest")
getKEGGBuilt(url = "http://www.genome.ad.jp/kegg/kegg2.html")
getYGBuilt()
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{src}] A character string for name of the data source. See details
for valid names
\item[\code{organism}] A character string for the name of the organism of
interests. See details for valid names
\item[\code{url}] A character string for the url from which built information
can be obtained
\end{ldescription}
\end{Arguments}
\begin{Details}\relax
\code{getLLBuilt} finds the built data for LocusLink from the statistics
page.

\code{getUGBuilt} finds the built data for UniGene from the Xx.info file,
where Xx is the short organism name (e.g. Hs for human)

\code{getUCSCBuilt} finds the built data for the Human Genome Project from
the folder for the latest release.

\code{getGOBuilt} finds the built data for Gene Ontology from the timestamp
for the -ont.xml.gz file.

\code{getKEGGBuilt} finds the built data for KEGG from kegg2.html page
(Release version and date)

\code{YGBuilt} gets built information for Yeast Genome data.

Valid data source names include LL - LocusLink, UG - UniGene, UCSC -
the Human Genome Project, GO - Gene Ontology, KEGG - KEGG, YG - Yeast
Genome.

Valid organism name include human, mouse, rat, and yeast at this time.\end{Details}
\begin{Value}
All functions return a string for the built information\end{Value}
\begin{Note}\relax
The functions are part of the Bioconductor project at Dana-Farber
Cancer Institute to provide Bioinformatics functionalities through R\end{Note}
\begin{Author}\relax
Jianhua Zhang\end{Author}
\begin{References}\relax
\url{http://www.ncbi.nlm.nih.gov/LocusLink/statistics.html},
\url{ftp://ftp.ncbi.nih.gov/repository/UniGene},
\url{http://www.godatabase.org/dev/database/archive/latest},
\url{http://www.genome.ad.jp/kegg/kegg2.html},
\url{ftp://ftp.ncbi.nih.gov/refseq/LocusLink/},
\url{http://www.yeastgenome.org}\end{References}
\begin{SeeAlso}\relax
\code{\Link{getSrcUrl}}\end{SeeAlso}
\begin{Examples}
\begin{ExampleCode}
# Get built information for LocusLink
ll <- getSrcBuilt(src = "LL")
ug <- getSrcBuilt(src = "UG", organism = "Mouse")
yg <- getYGBuilt()
ll
ug
yg
\end{ExampleCode}
\end{Examples}

