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| abstText | Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
| abstUrl | Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
| accessionToUID | A function to convert accession values to NCBI UIDs. |
| articleTitle | Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
| authors | Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
| buildChromLocation | A function to generate an instantiation of a chromLocation class |
| buildPubMedAbst | A function to generate an instantiation of a pubMedAbst class |
| CHRLOC2chromLoc | A function to generate an instantiation of a chromLocation class |
| chrom | Class chromLoc, a class for describing the location of a gene on a chromosome. |
| chromInfo | Class chromLocation, a class for describing genes and their chromosome mappings. |
| chromLengths | Class chromLocation, a class for describing genes and their chromosome mappings. |
| chromLoc | Class chromLoc, a class for describing the location of a gene on a chromosome. |
| chromLoc-class | Class chromLoc, a class for describing the location of a gene on a chromosome. |
| chromLocation-class | Class chromLocation, a class for describing genes and their chromosome mappings. |
| chromLocs | Class chromLocation, a class for describing genes and their chromosome mappings. |
| chromNames | Class chromLocation, a class for describing genes and their chromosome mappings. |
| contents | Functions to deal with Data Packages |
| dataSource | Class chromLocation, a class for describing genes and their chromosome mappings. |
| fileName | Classes to represent HTML pages |
| FramedHTMLPage | Classes to represent HTML pages |
| FramedHTMLPage-class | Classes to represent HTML pages |
| genbank | A function to open the browser to Genbank with the selected gene. |
| genelocator | A function to identify genes by their LocusLink (or other id). |
| geneSymbols | Class chromLocation, a class for describing genes and their chromosome mappings. |
| getGO | Functions to deal with Data Packages |
| getGOdesc | Functions to deal with Data Packages |
| getLL | Functions to deal with Data Packages |
| getPMID | Functions to deal with Data Packages |
| getPMInfo | extract publication details and abstract from annotate::pubmed function output |
| getQuery4LL | Functions to create hypertext links that can be placed in a table cell of a HTML file |
| getQuery4UG | Functions to create hypertext links that can be placed in a table cell of a HTML file |
| getQueryLink | Functions to create hypertext links that can be placed in a table cell of a HTML file |
| getSYMBOL | Functions to deal with Data Packages |
| getTDRows | Functions to create hypertext links that can be placed in a table cell of a HTML file |
| hgByChroms | A dataset to show the human genome base pair locations per chromosome. |
| hgCLengths | A dataset which contains the lengths (in base pairs) of the human chromosomes. |
| hgu95Achroloc | Annotation data for the Affymetrix HGU95A GeneChip |
| hgu95Achrom | Annotation data for the Affymetrix HGU95A GeneChip |
| hgu95AchromNames | Annotation data for the Affymetrix HGU95A GeneChip |
| hgu95All | Annotation data for the Affymetrix HGU95A GeneChip |
| hgu95AProbLocs | chromLocation instance hgu95AProbLocs, an example of a chromLocation object |
| hgu95Asym | Annotation data for the Affymetrix HGU95A GeneChip |
| HTMLPage | Classes to represent HTML pages |
| HTMLPage-class | Classes to represent HTML pages |
| installDataPackage | A function to install data packages from the Internet |
| journal | Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
| ll.htmlpage | Turn LocusLink ID's into a Clickable Web Page |
| locuslinkByID | A function to open the browser to Locuslink with the selected gene. |
| locuslinkQuery | A function to open the browser to Locuslink using a provided search query. |
| mainPage | Classes to represent HTML pages |
| makeAnchor | A Function To Generate HTML Anchors |
| nChrom | Class chromLocation, a class for describing genes and their chromosome mappings. |
| organism | Class chromLocation, a class for describing genes and their chromosome mappings. |
| pageText | Classes to represent HTML pages |
| pageTitle | Classes to represent HTML pages |
| pm.abstGrep | An interface to grep for PubMed abstracts. |
| pm.getabst | Obtain the abstracts for a set PubMed list. |
| pm.titles | Obtain the titles of the PubMed abstracts. |
| pmAbst2HTML | HTML Generation for PubMed Abstracts |
| pmAbst2html2 | HTML Generation for PubMed Abstracts |
| pmid | Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
| pmidQuery | A function to query PubMed |
| position | Class chromLoc, a class for describing the location of a gene on a chromosome. |
| probesToChrom | Class chromLocation, a class for describing genes and their chromosome mappings. |
| pubDate | Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
| pubmed | A function to open the browser to Pubmed with the selected gene. |
| pubMedAbst | Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
| pubMedAbst-class | Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
| sidePage | Classes to represent HTML pages |
| strand | Class chromLoc, a class for describing the location of a gene on a chromosome. |
| toFile | Classes to represent HTML pages |
| topPage | Classes to represent HTML pages |
| UniGeneQuery | Create a Query String for a UniGene Identifier |
| usedChromGenes | A function to select used genes on a chromosome from an exprSet. |