Microarrays

Animation of a typical experiment

http://www.bio.davidson.edu/courses/genomics/chip/chip.html

You tube video, microarrays for comparing infected and uninfected plants: http://www.youtube.com/watch?v=VNsThMNjKhM

Resources (lectures and labs):

Introduction to Microarrays using BioC:

Keith Baggerly and Kevin Coombes

Baggerly and Broom, Data structures and BioC

Hao Wu slides from course:

Normalization Slides by Brandon Higgs:

VSN Normalization, motivation

Quality control and design, with details about vsn

Thomas Girke

Comparison of Methods (Baggerly and Coombes):

Example of a Lab Analysing Estrogen Data

Example of a Lab covering RMA gcRMA by James Wettenhall: