Multiscale Systems Biology Collaboration

Papers

  • J. Nogales, S. Gudmundsson, E. M. Knight, B. O. Palsson, and I. Thiele, Systems biology of photosynthesis in cyanobacteria: detailing network optimality properties, submitted.

  • J. A. Lerman, D. R. Hyduke, H. Latif, V. A. Portnoy, N. E. Lewis, J. D. Orth, A. C. Schrimpe-Rutledge, R. D. Smith, J. N. Adkins, K. A. Zengler, and B. O. Palsson, Quantitative genome-scale simulation of molecular biology and metabolism, submitted.

Talks

  • S. Akle, O. A. Dalal, R. M. T. Fleming, M. A. Saunders, N. A. Taheri, and Y. Ye, Existence of positive equilibria for mass conserving and mass-action biochemical reaction networks with a single terminal-linkage class, DOE Genomic Science Awardee Meeting IX, Crystal City, VA, Apr 10–13, 2011.

  • R. M. T. Fleming, Stoichiometric modelling of biochemistry: A variational approach, Biomedical Engineering Department seminar, University of Texas at Dallas, Mar 11, 2011.

  • R. M. T. Fleming, On optimality principles in nonequilibrium biochemical networks, 11th International Conference on Systems Biology, Edinburgh, Oct 2010.

  • I. Thiele, Expanding genome-scale metabolic models, Workshop IOMPA, 11th International Conference on Systems Biology, Edinburgh, Oct 2010.

  • R. M. T. Fleming, A variational principle for computing nonequilibrium fluxes and potentials in genome-scale biochemical networks, Para 2010: State of the Art in Scientific and Parallel Computing in Reykjavik, Jun 2010.