The Clark Center at Stanford
Molecular Bioengineering for Medicine and Biotechnology -- the Barron Group The Barron Group @ Stanford
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Chronological Research
Biomimetics
Bioconjugates
Bioseparations
Biomimetics Publications
The following publications are listed in reverse chronological order:
Chongsiriwatana NP, Wetzler M, Barron AE, “Functional Synergy between Antimicrobial Peptoids and Peptides against Gram-Negative Bacteria,” Antimicrob Agents Chemother. 2011, 55, 5399-5402. pdf reprint
Brown NJ, Dohm MT, Bernardino de la Serna J, Barron AE, “Biomimetic N-terminal alkylation of peptoid analogues of surfactant protein C,” Biophys J. 2011, 101, 1076-85. pdf reprint
Dohm MT, Kapoor R, Barron AE, “Peptoids: Bio-Inspired Polymers as Potential Pharmaceuticals,” Curr Pharm Des. 2011.
Kapoor R, Wadman MW, Dohm MT, Czyzewski AM, Spormann AM, Barron AE, “Antimicrobial peptoids are effective against Pseudomonas aeruginosa biofilms,” Antimicrob. Agents Chemother. 2011, 55, 3054-3057. pdf reprint
Kapoor R, Eimerman PR, Hardy JW, Cirillo JD, Contag CH, Barron AE, "Efficacy of antimicrobial peptoids Against Mycobacterium," Antimicrob. Agents Chemother. 2011, 55, 3058-3062. pdf reprint
Park M, Matsuura H, Lamb RA, Barron AE, Jardetzky TS, “A fluorescence polarization assay using an engineered human respiratory syncytial virus F protein as a direct screening platform,” Analytical Biochemistry 2011, 409, 195-201. pdf reprint
Chongsiriwatana NP, Miller TM, Wetzler M, Vakulenko S, Karlsson AJ, Palecek SP, Mobashery S, Barron AE, “Short alkylated peptoid mimics of antimicrobial lipopeptides,” Antimicrobial Agents and Chemotherapy 2011, 55, 417-420. pdf reprint
Dohm MT, Brown NJ, Seurynck-Servoss SL, de la Serna JB, Barron AE, “Mimicking SP-C palmitoylation on a peptoid-based SP-B analogue markedly improves surface activity,” Biochimica Et Biophysica Acta Biomembranes 2010, 1798, 1663-1678. pdf reprint
Dohn MT, Mowery BP, Czyzewski AM, Stahl SS, Gellman SH, Barron AE, “Biophysical mimicry of lung surfactant protein B by random nylon-3 copolymers,” Journal of the American Chemical Society 2010, 132, 7957-7967. pdf reprint
Chongsiriwatana NP, Barron AE, “Comparing bacterial membrane interactions of antimicrobial peptides and their mimics,” Methods Mol Biol. 2010; 618:171-82.
Uchida M, McDermott G, Wetzler M, Le Gros MA, Myllysa M, Knoechel C, Barron AE, Larabell CA, “Soft X-ray tomography of phenotypic switching and the cellular response to antifungal peptoids in Candida albicans,” PNAS, 2009, 46, 19375–19380. pdf reprint
Seo J, Michaelian N, Owens SC, Dashner ST, Wong AJ, Barron AB, Carrasco MR, “Chemoselective and microwave-assisted synthesis of gycopeptoids,” Organic Letters, 2009, 22, 5210-5213. pdf reprint
Dohm MT, Seurynck-Servoss SL, Seo J, Zuckermann RN, Barron AE, "Close mimicry of lung surfactant protein B by "clicked" dimers of helical, cationic polypeptoids," PeptideScience 2009, 6, 538-553. pdf reprint
Chongsiriwatana NP, Patch JA, Czyzewski AM, Dohm MT, Ivankin A, Gidalevitz D, Zuckermann RN, Barron AE, "Peptoids that mimic the structure, function, and mechanism of helical antimicrobial peptides," PNAS 2008, 105: 2794-2799. pdf reprint
Brown NJ, Wu CW, Seurynck-Servoss SL, Barron AE, "Effects of hydrophobic helix length and side chain chemistry on biomimicry in peptoid analogues of SP-C," Biochemistry 2008, 47: 1808-1818. pdf reprint
Brown NJ, Johansson J, Barron AE, "Biomimicry of surfactant protein C," Acc. Chem. Res. 2008, 41, 1409-1417. (Review article) pdf reprint
Statz AR, Park JP, Chongsiriwatana NP, Barron AE, Messersmith PB, "Surface-immobilised antimicrobial peptoids," Biofouling 2008, 24, 439-448 pdf reprint
Czyzewski AM, Barron AE, "Protein and Peptide Biomimicry: Gold Mining Inspiration from Nature's Ingenuity," AIChE Journal 2008, 54: 1-7. pdf reprint
Seurynck-Servoss SL, Brown NJ, Dohm MT, Wu CW, Barron AE, "Lipid composition greatly affects the in vitro surface activity of lung surfactant protein mimics," Colloids & Surfaces B: Biointerfaces 2007, 57: 37-55. pdf reprint
Seurynck-Servoss SL, Dohm MT, Barron AE, "Effects of including an N-terminal insertion region and arginine-mimetic side chains in helical peptoid analogues of lung surfactant protein B", Biochemistry, 2006, 45: 11809-11818 pdf reprint
Huang K, Wu CW, Sanborn TJ, Patch JA, Kirshenbaum K, Zuckermann RN, Barron AE, Radhakrishnan I, "A threaded loop conformation adopted by a family of peptoid nonamers," Journal of the American Chemical Society 2006, 128: 1733-1738. pdf reprint
Seurynck SL, Brown NJ, Wu CW, Germino KW, Kolmeir EK, Ingenito EP, Glucksberg MR, Barron AE, Johnson M, "Optical monitoring of bubble shape and size in a pulsating bubble surfactometer," Journal of Applied Physiology 2005, 99: 624-633. pdf reprint
Seurynck SL, Patch JA, Barron AE, "Simple, helical peptoid analogs of lung surfactant protein B," Chemistry and Biology 2004, 12: 77-88. pdf reprint
Patch JA, Kirshenbaum K, Seurynck SL, Zuckermann RN, Barron AE, "Versatile Oligo (N-substituted) Glycines: The Many Roles of Peptoids in Drug Discovery," Pseudo-peptides in Drug Discovery, P.E. Nielsen, ed., (2004) John Wiley & Sons Publishers, Hoboken, NJ. (book chapter) pdf reprint
Patch JA, Barron AE, "Helical peptoid mimics of magainin-2 amide," Journal of the American Chemical Society 2003, 125: 12092-12093. pdf reprint
Wu CW, Kirshenbaum K, Sanborn TJ, Patch JA, Huang K, Dill KA, Zuckermann RN, Barron AE, "Structural and spectroscopic studies of peptoid oligomers with a-chiral, aliphatic side chains," Journal of the American Chemical Society 2003, 125: 13525-13530. pdf reprint
Wu CW, Seurynck SL, Lee KYC, Barron AE, "Helical peptoid mimics of lung surfactant protein C," Chemistry & Biology 2003, 10: 1057-1063. pdf reprint
Patch JA, Barron AE, "Mimicry of bioactive peptides via non-natural, sequence-specific peptidomimetic oligomers," Current Opinion in Chemical Biology 2002, 6: 872-877. pdf reprint
Sanborn TJ, Wu CW, Zuckermann RN, Barron AE, "Extreme stability of helices formed by water-soluble poly-N-substituted glycines (polypeptoids) with a-chiral side chains," Biopolymers 2002, 63: 12-20. pdf reprint
C.W. Wu and A.E. Barron, "Biomimetic Lung Surfactant Replacements," in Biomimetic Materials and Design: Biointerfacial Strategies, Tissue Engineering and Targeted Drug Delivery, A.K. Dillow and A. Lowman, Eds. (2002) Marcel-Dekker Publishers, New York. (book chapter) pdf reprint
Wu CW, Sanborn TJ, Huang K, Zuckermann RN, Barron AE, "Peptoid oligomers with a-chiral, aromatic side chains: sequence requirements for the formation of stable peptoid helices," J. Am. Chem. Soc. 2001, 123: 6778-6784. pdf reprint
Wu CW, Sanborn TJ, Zuckermann RN, Barron AE, "Peptoid oligomers with a-chiral, aromatic side chains: effects of chain length on secondary structure," J. Am. Chem. Soc. 2001, 123: 2958-2963. pdf reprint
Barron AE and Zuckermann RN, "Bioinspired polymeric materials: In-between proteins and plastics," Current Opinion in Chemical Biology 1999, 3: 681-687. pdf reprint
Armand P, Kirshenbaum K, Goldsmith RE, Farr-Jones S, Barron AE, Truong KTV, Dill KA, Zuckermann RN, "NMR determination of the major solution conformation of a peptoid pentamer with chiral side chains," Proc. Natl. Acad. Sci. USA 1998, 95: 4309-4314. pdf reprint
Kirshenbaum K, Barron AE, Goldsmith RE, Armand P, Bradley EK, Truong KTV, Dill KA, Cohen FE, Zuckermann RN, "Sequence-specific polypeptoids: A diverse family of heteropolymers with stable secondary structure," Proc. Natl. Acad. Sci. USA 1998, 95: 4303-4308. pdf reprint
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