▸ Publications

 

* Corresponding author


[Papers of Special Interest]

friedrich

Riedel-Kruse*, I.H., Chung, A.M., Dura, B., Hamilton, A.L., and B.C. Lee 
Design, engineering and utility of biotic games
Lab Chip (2011). 11, 14-22 (pdf) (journal) (viewpoint)

 

In this paper we propose that modern bioengineering technologies - such as micro-fluidics or synthetic biology - could be used as a new gaming platform - similar to electronics enabling video games. We give proof of concept by presenting various "biotic games". We also discuss future applications, especially for education and large scale science research, as biotic games would enable non-scientists to engage and interact with modern biotechnology. Driving this concept and its application forward is an active focus in our lab.

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Riedel-Kruse*, I.H., Müller, C., and A.C.Oates*
Synchrony dynamics during initiation, failure and rescue of the segmentation clock.
Science (2007) 317: 1911. (pdf) (journal) (Editors' choice)

 

This paper demonstrates how quantitative gene perturbation methods combined with biophysical modeling can lead to deeper conceptual insights into developmental systems. We use zebrafish as a model to study how the Delta-Notch pathway enables genetic oscillators inside the segmentation clock to be synchronized despite the presence of developmental noise. This multi-cellular genetic network is termed the segmentation clock and drives segmentation in vertebrates. In our lab we use a similar biophysics approach to study the dynamical and mechanical aspects of other developmental pattern formation systems.



[Complete List]

 

Signaling delays preclude defects in lateral inhibition patterning
David S. Glass, Xiaofan Jin, Ingmar H. Riedel-Kruse*

In preparation

 

In vivo strain measurements in early zebrafish embryos

Andrea L. Hamilton, Jack Chai, Victoria Wu, Alexander R. Dunn, Ingmar H. Riedel-Kruse*
In preparation

 

Tangible interactive microbiology for informal science education

Seung Ah Lee, Alice Chung, Nate Cira and Ingmar H. Riedel-Kruse*
Submitted (2014)

 

Row with the flow
Benjamin M. Friedrich, Ingmar H. Riedel-Kruse

eLife (2014);3:e03804. doi: 10.7554/eLife.03804.

friedrich

A Biotic Game Design Course

Nate Cira, Alice Chung, Aleksandra K. Denisin, Stefano Rensi, Gabriel Sanchez, Stephen Quake, Ingmar H. Riedel-Kruse*
Submitted (2014)

friedrich

Real-time biology cloud experimentation platform with micro-swimmers
Alice Chung, Nate Cira, Zahid Hossain, Ingmar H. Riedel-Kruse*

In preparation

friedrich

Cloud experimentation for biology: Systems architecture and utility for online education and research

Zahid Hossain, Alice Chung, Nathan Orloff, Sean Choi, Stephen Koo, Cynthia Truong, Paulo Blikstein, and Ingmar H. Riedel-Kruse*

Submitted (2014)

friedrich

Actomyosin generated tension coordinates local and global cell movements during early zebrafish development
Jack Chai, Andrea L. Hamilton, Michael Krieg, Craig D. Buckley, Ingmar H. Riedel-Kruse, Alexander R. Dunn
Submitted (2014)

friedrich

Active Phase and Amplitude Fluctuations of Flagellar Beating

Rui Ma, Gary S. Klindt, Ingmar H. Riedel-Kruse, Frank Julicher, Benjamin M. Friedrich
Phys. Rev. Lett. (2014) 113, 04810.

friedrich

Integrated imaging and bioprinting for scalable, networkable desktop experimentation
Nathan D. Orloff, Cynthia Truong, Nathan Cira, Stephen Koo, Andrea Hamilton, Sean Choi, Ingmar H. Riedel-Kruse*
RCS Advances (2014) in print DOI:10.1039/C4RA05932H

friedrich

Innocent fun or microslavery?: Public Responses to and Ethical Analysis of Biotic Games

Hayden Harvey, Molly Havard, David Magnus, Mildred Cho, Ingmar H. Riedel-Kruse
Hasting Center Report (2014) In print .

friedrich

Design, engineering and utility of biotic games

Riedel-Kruse*, I.H., Chung, A.M., Dura, B., Hamilton, A.L., B.C. Lee 
Lab Chip (2011). 11, 14-22 (pdf) (journal) (viewpoint)

friedrich

High-precision tracking of sperm swimming fine structure provides strong test of resistive force theory

B. M. Friedrich, I. H. Riedel-Kruse, J. Howard, F. Jülicher* 
Journal of Experimental Biology (2010) 213, 1226. (pdf) (journal)

Du imag

Three-dimensional extracellular recording of neuronal activity with multifunctional microelectrode arrays

Du J., Riedel-Kruse, I.H., Nawroth, J.C., Laurent, G.J., Roukes, M.L., S.C. Masmanidis*  
J. Neurophysiol. (2009) 101: 1671. (pdf) (journal)

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Synchrony dynamics during initiation, failure and rescue of the segmentation clock.

Riedel-Kruse*, I.H., Müller, C., A.C.Oates*
Science (2007) 317: 1911. (pdf) (journal) (Editors' choice)

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How molecular motors shape the flagellar beat.

Riedel-Kruse", I.H., Hilfinger", A., Howard*, J., F. Jülicher*

(" equal contribution random order)
HFSP Journal (2007) 1: 192. (pdf) (journal)

paper log

A self-organized vortex array of hydrodynamically entrained sperm cells.

Riedel*, I.H., Kruse, K., J. Howard*
Science (2005) 309: 300. (pdf) (journal) (Editors' choice)

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Ab initio calculation of the transmission coefficients from a superlattice electronic structure.

Riedel, I., Zahn, P., I. Mertig*
Phys. Rev. B (2001) 63: 195403. (pdf) (journal)