▸ Publications

 

Highlights (Full list further below)

* Corresponding author

friedrich

Design Guidelines and Empirical Case Study for Scaling Authentic Inquiry-based Science Learning via Open Online Courses and Interactive Biology Cloud Labs

Hossain Z, Bumbacher E, Brauneis A, Diaz M, Saltarelli A, Blikstein P, Riedel-Kruse IH.*

International Journal or Artificial Intelligence in Education (In press / published advanced online, 2017). (pdf) (journal)

friedrich

Device and Programming Abstractions for Spatiotemporal Control of Active Micro-Particle swarms

Lam AT, Samuel-Gama KG, Griffin J, Loeun M, Gerber L, Hossain Z, Cira NJ, Lee SA, Riedel-Kruse IH*

Lab on a Chip (2017). (pdf) (journal)

Selected as Top 10% article / HOT article in Lab on a Chip

2d robot

Liquid-handling Lego robots and experiments for STEM education and research

Gerber LC, Calasanz-Kaiser A., Hyman L., Voitiuk K., Patil U., Riedel-Kruse IH.*

PLoS Biology (2017). (pdf) (journal)

Build your own Lego pipetting robot (all instructions open source are here) to do your life-science experiments.

friedrich

Interactive and Scalable Biology Cloud Experimentation for Scientific Inquiry and Education

Hossain Z, Bumbacher E, Chung AM, Honesty K, Walter A, Litton C, Pradhan S, Jona K, Blikstein P, Riedel-Kruse IH.*

Nature Biotechnology 34(12) (2016). (pdf) (journal)

phone_kit

LudusScope: Accessible Interactive Smartphone Microscopy for Life-Science Education

Honesty Kim, Seung Ah Lee, Lukas Gerber, Daniel Chiu, Sherwin Yuyang Xia, Nate Cira, Ingmar H. Riedel-Kruse*
PLoS ONE 11(10): e0162602 (2016). (pdf) (journal).

Build your own microscope (all instructions open source are here), interact with cells in realtime, play games, and explore.

Featured in Nature.

Among top 1% most downloaded PLoS one articles in 2016.

lab_inhibit

Signaling Delays preclude Defects in Lateral Inhibition Patterning
David S. Glass, Xiaofan Jin, Ingmar H. Riedel-Kruse*

Phys. Rev. Lett. 116, 128102 (2016). (pdf) (journal)

Hey mom and dad - it's the same journal that just reported the gravitational waves!

friedrich

Cloud Experimentation for Biology: Systems Architecture and Utility for Online Education and Research

Zahid Hossain, Alice Chung, Nathan Orloff, Sean Choi, Stephen Koo, Cynthia Truong, Paulo Blikstein, and Ingmar H. Riedel-Kruse*

Proceedings of the 33rd Annual ACM Conference on Human Factors in Computing Systems (3681). 2015 (pdf) (journal) (video)

Honorable mention best paper award.

tangible paper

Trap it! : A Playful Human-Biology Interaction for a
Museum Installation

Seung Ah Lee, Engin Bumbacher, Alice M. Chung, Nate Cira, Byron Walker, Ji Young Park, Barry Starr, Paulo Blikstein, and Ingmar H. Riedel-Kruse*
Proceedings of the 33rd Annual ACM Conference on Human Factors in Computing Systems (2593). (2015) (pdf) (journal) (video)

friedrich

A Biotic Game Design Course

Nate Cira, Alice Chung, Aleksandra K. Denisin, Stefano Rensi, Gabriel Sanchez, Stephen Quake, Ingmar H. Riedel-Kruse*
PLoS Biology 2015 (pdf) (journal) (video)

friedrich

Design, Engineering and Utility of Biotic Games

Riedel-Kruse*, I.H., Chung, A.M., Dura, B., Hamilton, A.L., B.C. Lee 
Lab on a Chip (2011). 11, 14-22 (pdf) (journal) (viewpoint) (video)

most viewed video ever on the Lab on a Chip channel

Signficant secondary press in Science, Nature Biotechnology, WIRED, Scientific American, ...

paper icon

Synchrony dynamics during initiation, failure and rescue of the segmentation clock.

Riedel-Kruse*, I.H., Müller, C., A.C.Oates*
Science (2007) 317: 1911. (pdf) (journal) (Editors' choice)

paper log

A self-organized vortex array of hydrodynamically entrained sperm cells.

Riedel*, I.H., Kruse, K., J. Howard*
Science (2005) 309: 300. (pdf) (journal) (Editors' choice)

 

Full publication list

* Corresponding author


friedrich

32 Design Guidelines and Empirical Case Study for Scaling Authentic Inquiry-based Science Learning via Open Online Courses and Interactive Biology Cloud Labs

Hossain Z, Bumbacher E, Brauneis A, Diaz M, Saltarelli A, Blikstein P, Riedel-Kruse IH.*

International Journal or Artificial Intelligence in Education (In press / published advanced online, 2017). (pdf) (journal)

friedrich

31 Stem Cell Scaling during Adult Organ Resizing

Du X, O'Brien L*, Riedel-Kruse IH*
Biophysical Journal (Accepted / in press 2017). (pdf) (pre-print bioarXiv)

friedrich

30 Authentic Science Inquiry Learning at Scale Enabled by an Interactive Biology Cloud Experimentation Lab

Hossain Z, Bumbacher E, Blikstein P, Riedel-Kruse IH.*

Learning at Scale (2017). (pdf) (journal)

friedrich

29 Device and programming abstractions for spatiotemporal control of active micro-particle swarms

Lam AT, Samuel-Gama KG, Griffin J, Loeun M, Gerber L, Hossain Z, Cira NJ, Lee SA, Riedel-Kruse IH*

Lab on a Chip (2017). (pdf) (journal)

2d robot

28 Liquid-handling Lego robots and experiments for STEM education and research

Gerber LC, Calasanz-Kaiser A., Hyman L., Voitiuk K., Patil U., Riedel-Kruse IH.*

PLoS Biology (2017). (pdf) (journal)

cloud_lab_transc_Rev

27 Incorporating a Commercial Biology Cloud Lab into Online Education

Riedel-Kruse IH.*

14th International Conference on Remote Engineering and Virtual Instrumentation. IEEE. (2017) (pdf)

schematic image cloud lab

26 Life-Science Experiments Online: Technological Frameworks and Educational Use Cases

Hossain Z, Riedel-Kruse IH.*

Review in upcoming book "Cyber-Physical Laboratories in Engineering and Science Education" Accepted (2017).

friedrich

25 Interactive and Scalable Biology Cloud Experimentation for Scientific Inquiry and Education

Hossain Z, Bumbacher E, Chung AM, Honesty K, Walter A, Litton C, Pradhan S, Jona K, Blikstein P, Riedel-Kruse IH.*

Nature Biotechnology 34(12) (2016). (pdf) (journal)

phone_kit

24 LudusScope: Accessible Interactive Smartphone Microscopy for Life-Science Education

Honesty Kim, Seung Ah Lee, Lukas Gerber, Daniel Chiu, Sherwin Yuyang Xia, Nate Cira, Ingmar H. Riedel-Kruse*
PLoS ONE 11(10): e0162602 (2016). (pdf) (journal)

HBD

23 Interactive Biotechnology: Design Rules for Integrating Living Matter into Digital Games

Lukas Gerber, Honesty Kim, Ingmar H. Riedel-Kruse*
DiGRA/FDG Vol. 13 (2016). (pdf) (journal)

biographr

22 BioGraphr: Science Games on a Biotic Computer
Gerber LC, Doshi M, Kim H, Ingmar H. Riedel-Kruse*

DiGRA/FDG Vol. 13 (2016). (pdf) (journal)

biographr

21 On the General Analytical Solution of the Kinematic Cosserat Equations

Dominik L. Michels*, Dmitry A. Lyakhov, Vladimir P. Gerdt, Zahid Hossain, Ingmar H. Riedel-Kruse, and Andreas G. Weber.

Computer Algebra in Scientific Computing, CASC 2016, LNCS 9890, Springer, (2016). (pdf) (journal)

lab_inhibit

20 Signaling Delays preclude Defects in Lateral Inhibition Patterning
David S. Glass, Xiaofan Jin, Ingmar H. Riedel-Kruse*

Phys. Rev. Lett. 116, 128102 (2016). (pdf) (journal)

Sticker_MF

19 Microfluidic Assembly Kit based on laser-cut Building Blocks for Education and fast Prototyping
Gerber LC, Kim H, Ingmar H. Riedel-Kruse*
Biomicrofluidics (2015) (pdf) (journal)

friedrich

18 A Force Balance Can Explain Local and Global Cell Movements during Early Zebrafish Development
Jack Chai, Andrea L. Hamilton, Michael Krieg, Craig D. Buckley, Ingmar H. Riedel-Kruse, Alexander R. Dunn
Biophysical Journal (2015) (pdf) (journal)

 

17 Real-time and turn-based biology online experimentation
Zahid Hossain, Alice M. Chung, Ingmar H. Riedel-Kruse*
12th International Conference on Remote Engineering and Virtual Instrumentation, pp. 86-89. IEEE. (2015). (journal)

tangible paper

16 Trap it! : A Playful Human-Biology Interaction for a
Museum Installation

Seung Ah Lee, Engin Bumbacher, Alice M. Chung, Nate Cira, Byron Walker, Ji Young Park, Barry Starr, Paulo Blikstein, and Ingmar H. Riedel-Kruse*
Proceedings of the 33rd Annual ACM Conference on Human Factors in Computing Systems (2593). 2015 (pdf) (journal) (video)

friedrich

15 Cloud Experimentation for Biology: Systems Architecture and Utility for Online Education and Research

Zahid Hossain, Alice Chung, Nathan Orloff, Sean Choi, Stephen Koo, Cynthia Truong, Paulo Blikstein, and Ingmar H. Riedel-Kruse*

Proceedings of the 33rd Annual ACM Conference on Human Factors in Computing Systems (3681). 2015 (pdf) (journal) (video)

honorable mention best paper award

friedrich

14 A Biotic Game Design Course

Nate Cira, Alice Chung, Aleksandra K. Denisin, Stefano Rensi, Gabriel Sanchez, Stephen Quake, Ingmar H. Riedel-Kruse*
PLoS Biology 2015 (pdf) (journal) (video)

friedrich

13 Tangible interactive microbiology for informal science education

Seung Ah Lee, Alice Chung, Nate Cira, Ingmar H. Riedel-Kruse*
TEI'15 (2015) 273. (pdf) (journal) (video)

top downloaded paper

shape mode paper

12 Shape Mode Analysis Exposes Movement Patterns in Biology: Flagella and Flatworms as Case Studies

Steffen Werner, Jochen C. Rink, Ingmar H. Riedel-Kruse, Benjamin M. Friedrich

PLoS One (2014) 26;9(11):e113083. (pdf) (journal)

row with flow image

11 Row with the flow
Benjamin M. Friedrich, Ingmar H. Riedel-Kruse

eLife (2014);3:e03804. doi: 10.7554/eLife.03804.(pdf) (journal)

friedrich

10 Active Phase and Amplitude Fluctuations of Flagellar Beating

Rui Ma, Gary S. Klindt, Ingmar H. Riedel-Kruse, Frank Julicher, Benjamin M. Friedrich
Phys. Rev. Lett. (2014) 113, 04810. (pdf) (journal)

friedrich

9 Integrated imaging and bioprinting for scalable, networkable desktop experimentation
Nathan D. Orloff, Cynthia Truong, Nathan Cira, Stephen Koo, Andrea Hamilton, Sean Choi, Ingmar H. Riedel-Kruse*
RCS Advances (2014) DOI:10.1039/C4RA05932H (pdf) (journal)

friedrich

8 Innocent fun or microslavery?: Public Responses to and Ethical Analysis of Biotic Games

Hayden Harvey, Molly Havard, David Magnus, Mildred Cho, Ingmar H. Riedel-Kruse
Hasting Center Report (2014); 44(6):38-46. doi: 10.1002/hast.386.

(pdf) (journal)

friedrich

7 Design, Engineering and Utility of Biotic Games

Riedel-Kruse*, I.H., Chung, A.M., Dura, B., Hamilton, A.L., B.C. Lee 
Lab on a Chip (2011). 11, 14-22 (pdf) (journal) (viewpoint) (video)

Most viewed video ever on the Lab on a Chip channel

Signficant secondary press in Science, Nature Biotechnology, WIRED, Scientific American, ...

friedrich

6 High-precision tracking of sperm swimming fine structure provides strong test of resistive force theory

B. M. Friedrich, I. H. Riedel-Kruse, J. Howard, F. Jülicher* 
Journal of Experimental Biology (2010) 213, 1226. (pdf) (journal)

Du imag

5 Three-dimensional extracellular recording of neuronal activity with multifunctional microelectrode arrays

Du J., Riedel-Kruse, I.H., Nawroth, J.C., Laurent, G.J., Roukes, M.L., S.C. Masmanidis*  
J. Neurophysiol. (2009) 101: 1671. (pdf) (journal)

paper icon

4 Synchrony dynamics during initiation, failure and rescue of the segmentation clock.

Riedel-Kruse*, I.H., Müller, C., A.C.Oates*
Science (2007) 317: 1911. (pdf) (journal) (Editors' choice)

paper icon

3 How molecular motors shape the flagellar beat.

Riedel-Kruse", I.H., Hilfinger", A., Howard*, J., F. Jülicher*

(" equal contribution random order)
HFSP Journal (2007) 1: 192. (pdf) (journal)

paper log

2 A self-organized vortex array of hydrodynamically entrained sperm cells.

Riedel*, I.H., Kruse, K., J. Howard*
Science (2005) 309: 300. (pdf) (journal) (Editors' choice)

paper icon

1 Ab initio calculation of the transmission coefficients from a superlattice electronic structure.

Riedel, I., Zahn, P., I. Mertig*
Phys. Rev. B (2001) 63: 195403. (pdf) (journal)