Biomedical Computation Major Program

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Computational techniques are now being used to ask and answer fundamental questions in biology and medicine in ways never before possible. The Biomedical Computation (BMC) major allows students to focus on this exciting interdisciplinary field – the use of advanced computational techniques in biology and medicine.
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== 2013-14 BMC Program Requirements  ==
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BMC is an IDP, or interdisciplinary program, with its home in the School of Engineering. Students who major in BMC will gain a rigorous foundation in the many component fields that go into biomedical computation, including computer science, math and statistics, biology, and chemistry. Each student then has the opportunity to pursue one of four tracks most suited to his or her interests.
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*UG Directors: Russ Altman, Clark S242, russ.altman@stanford.edu and Daphne Koller, Gates 1-A-142, koller@cs.stanford.edu
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*Program Advisor: Amit Kaushal, akaushal@stanford.edu
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*Student Services Administrator: Darlene Lazar, 135 Huang, dlazar@stanford.edu
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Our graduates have gone on to pursue a wide range of paths after graduation. Many of our students have chosen to continue their studies and pursue advanced degrees in various fields, including bioinformatics, bioengineering, or any of the pure biological or computational sciences. We have also had a number of students enroll in medical school or MD/PhD programs. BMC graduates have also ended up in fields a bit farther away from biomedical computation, such as law school, management consulting, and others. BMC gives students a solid foundation in a number of different fields, and students have the ability to pursue a variety of career paths in any of the fields that make up the major.
+
Computational techniques are now being used to ask and answer fundamental questions in biology and medicine in ways never before possible. The Biomedical Computation (BMC) major allows students to focus on this exciting interdisciplinary field – the use of advanced computational techniques in biology and medicine.  
-
=== COMPONENTS OF BMC ===
+
BMC is an IDP, or interdisciplinary program, with its home in the School of Engineering. Students who major in BMC will gain a rigorous foundation in the many component fields that go into biomedical computation, including computer science, math and statistics, biology, and chemistry. Each student then has the opportunity to pursue one of four tracks most suited to his or her interests.
-
BMC Core: Math, Science, Engineering Fundamentals, and TIS
+
Our graduates have gone on to pursue a wide range of paths after graduation. Many of our students have chosen to continue their studies and pursue advanced degrees in various fields, including bioinformatics, bioengineering, or any of the pure biological or computational sciences. We have also had a number of students enroll in medical school or MD/PhD programs. BMC graduates have also ended up in fields a bit farther away from biomedical computation, such as law school, management consulting, and others. BMC gives students a solid foundation in a number of different fields, and students have the ability to pursue a variety of career paths in any of the fields that make up the major.
-
All BMC students take courses to get a solid foundation in the component disciplines of biomedical computation. Most of these courses are typically taken during freshman and sophomore year. These courses include:<br>Math: MATH 41, 42, STATS 116 (or equivalent), and one additional math course specific to your track.<br>Chemistry: CHEM31A+B or 31X or ENGR 31; CHEM 33<br>Biology: BIO Core or Human Biology Core (each is a 3-quarter sequence, ideally taken in sophomore year)<br>Physics: PHYSICS 41 <br>Computer Science: CS 107; CS106B or X; CS103; CS 161<br>Engineering Fundamentals: CS 106 (see above) plus one additional elective (may not be CS 106A; see Chapter 3, Figure 3-4 for list of other SoE approved courses)<br>Technology in Society (TIS): One course required; see list of SoE approved courses in Chapter 3, Figure 3-3. HUMBIO 174, Foundations of Bioethics (3 units, Wtr, prerequisite of HUMBIO core), is an option to fulfill this requirement only for BMC majors.<br>Please see the program sheets for the exact course list.<br>Tracks
+
=== COMPONENTS OF BMC ===
-
For the upper division courses in the major, a student must choose between one of the four tracks of BMC. The four tracks are <br>Informatics <br>Simulation<br>Cellular/Molecular<br>Organs/Organ Systems<br>Two of the tracks, Informatics and Simulation, put a bit more emphasis on the computational aspects of the discipline, while the other two, Cellular/Molecular and Organs/Organ Systems, provide more depth in biology.
+
BMC Core: Math, Science, Engineering Fundamentals, and TIS
-
Each of the tracks consists of a core of about three to five courses. These are courses that provide students the core knowledge related to their in-depth area of study. The tracks also have elective requirements, to ensure students gain breadth in upper division courses as well. The entire track portion of BMC is composed of nine to ten courses in total. Lists of electives can be found on the BMC website bmc.stanford.edu.<br><br>
+
All BMC students take courses to get a solid foundation in the component disciplines of biomedical computation. Most of these courses are typically taken during freshman and sophomore year. These courses include:<br>Math: MATH 41, 42, STATS 116 (or equivalent), and one additional math course specific to your track.<br>Chemistry: CHEM31A+B or 31X or ENGR 31; CHEM 33<br>Biology: BIO Core or Human Biology Core (each is a 3-quarter sequence, ideally taken in sophomore year)<br>Physics: PHYSICS 41 <br>Computer Science: CS 107; CS106B or X; CS103; CS 161<br>Engineering Fundamentals: CS 106B or X (see above) plus one additional elective (may not be CS 106A; see Chapter 3, Figure 3-4 for list of other SoE approved courses)<br>Technology in Society (TIS): One course required; see list of SoE approved courses in Chapter 3, Figure 3-3. HUMBIO 174, Foundations of Bioethics (3 units, Wtr, prerequisite of HUMBIO core), is an option to fulfill this requirement only for BMC majors.<br>Please see the program sheets for the exact course list.<br>Tracks
 +
 
 +
For the upper division courses in the major, a student must choose between one of the four tracks of BMC. The four tracks are <br>
 +
 
 +
*Informatics
 +
*Simulation
 +
*Cellular/Molecular
 +
*Organs/Organ Systems
 +
 
 +
Two of the tracks, Informatics and Simulation, put a bit more emphasis on the computational aspects of the discipline, while the other two, Cellular/Molecular and Organs/Organ Systems, provide more depth in biology.
 +
 
 +
Each of the tracks consists of a core of about three to five courses. These are courses that provide students the core knowledge related to their in-depth area of study. The tracks also have elective requirements, to ensure students gain breadth in upper division courses as well. The entire track portion of BMC is composed of nine to ten courses in total. Lists of electives can be found on the [http://www.stanford.edu/dept/bmc/ BMC website].<br>
 +
 
 +
=== BMC Depth: Research, Writing in the Major, and Capstone Class ===
 +
 
 +
'''Research''': Every BMC student must complete 6 units of directed research under a faculty member. This requirement of research is fairly unique to BMC among majors at Stanford. It allows our students to work on cutting-edge projects as a part of their undergraduate curriculum. This research typically occurs during the junior or senior year, and may be undertaken with faculty members from any School at Stanford. The main requirement is that the student be doing actual, hands-on biomedical computation as a part of the research project. The student must get approval from the BMC Program Directors before undertaking his or her research project.
 +
 
 +
'''WIM:''' The Writing in the Major requirement gives students an opportunity to learn to effectively communicate ideas in their fields of study. In BMC, there are two ways to satisfy this requirement:<br>1. Students may fulfill the WIM requirement by writing a ~15 page technical report concurrently with performing the research for the research requirement. This report is in the form of a technical publication about the students work, and is completed under supervision of your research mentor and the School of Engineering writing tutors. For this option, student can either 1) Enroll in least 3 of the 6 research units as CS191W, or 2) enroll in 5 units of research and 1 unit of E199W. <br>2. Students wishing to satisfy their WIM requirement independently of their research work may enroll in CS272.
 +
 
 +
'''Capstone Class''': The BMC Capstone class gives students the chance to take a rigorous course that thoroughly integrates various aspects of biology and computation. This course is typically taken during junior or senior year. Currently, this requirement is satisfied by one of the following courses: CS270, CS273A, CS274, CS275, CS278, or CS279
 +
 
 +
'''ADVISING IN BMC'''
 +
 
 +
There are two types of advisors for the major: an academic advisor and a research advisor. The academic advisor is the person who oversees your path through BMC. In is necessary to have found an academic advisor in order to declare the major. Because BMC is in the School of Engineering, the student’s academic advisor must have an appointment in the School of Engineering. The one major commitment that this advisor makes in BMC that is different from other majors is that, in the case that the BMC student has trouble finding a research mentor, the academic advisor agrees that the student can work in his or her lab to fulfill the BMC research requirement.
 +
 
 +
The other advisor is the research mentor. Because there is interesting biomedical computation work being done throughout Stanford, not just in the School of Engineering, we place no restrictions as to where within Stanford the faculty mentor conducts his or her research. It is not necessary to have a research advisor at the time of declaring; many of our students do not.<br>It is acceptable for the same faculty member to serve as both the academic and research advisor for a BMC student.
 +
 
 +
For additional information about the major, and for step-by-step instructions on how to declare, please visit the BMC website at http://bmc.stanford.edu. If you have further questions, please contact the student advisor for the major, Amit Kaushal, at akaushal@stanford.edu.
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 +
=== PROGRAM OPTIONS ===
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 +
If I do BMC can I also…<br>'''Be Premed?'''<br>Yes. This requires taking about six additional chemistry, physics, and biology lab courses. While we can offer some advice here, it is important to talk to a premed advisor to cover which additional courses you need to take.<br>'''Study abroad?'''<br>Absolutely! Though the major requirements are many, it is quite possible to go abroad. The earlier you start planning, the easier this will be.<br>'''Do an Honor thesis?'''<br>Yes. The full requirements for honors are described in Chapter 6 and on the BMC website. Please contact BMC Advisor Amit Kaushal (akaushal@stanford.edu) if you are interested in this option.<br>'''Add an additional major or minor in something else?'''<br>Yes. While the major is demanding, some students have managed to squeeze in other areas of study as well. Some students have asked about double-majoring or minoring in Computer Science or Biology. It does not make much sense to do so, since the BMC major has a large number of courses from these departments already. BMC majors can tailor their curriculum so that they are quite well trained in either of these disciplines.<br>'''Coterm?'''<br>Absolutely. Stanford offers students the opportunity to study an additional year or so and obtain a coterminal Master’s degree. Many of our students have gone on to coterm in various departments at Stanford. Please contact the department in which you wish to coterm in your junior year – requirements vary from department to department, and this will leave enough time to plan for the application process and the courses you might have to take before enrolling.
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 +
=== Instructions for Declaring BMC as a Major ===
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 +
1. Gather information about the major by talking to students and professors.<br>2. Design a 4-year plan based on the samples previous pages.<br>3. Print a copy of your transcript from Axess.<br>4. Select an advisor (choose from the list of faculty listed under “BMC Faculty Advisors” on the BMC website at http://bmc.stanford.edu).<br>5. Download the BSE:BMC program sheet from the School of Engineering web site (http://ughb.stanford.edu). <br>6. Meet with your advisor to review the 4-year plan<br>7. Based on your plan, fill out your program sheet<br>8. Meet with either Prof. Russ Altman or Prof. Daphne Koller to get approval; have them sign your program sheet.<br>9. Turn in your completed and signed Program Sheet, 4-Year Plan, and an unofficial Stanford transcript to Darlene Lazar in 135 Huang. She will review for completion. You must then declare your major in Axess:<br>a. Select “Engineering” as your Major <br>b. Select “BMC” as your subplan<br>c. Ask Darlene (dlazar@stanford.edu) to approve your major in PeopleSoft<br>10. When your major is approved, Darlene will notify you via email. <br><br>
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<br><br>

Latest revision as of 10:20, 1 October 2013

Contents

[edit] 2013-14 BMC Program Requirements

  • UG Directors: Russ Altman, Clark S242, russ.altman@stanford.edu and Daphne Koller, Gates 1-A-142, koller@cs.stanford.edu
  • Program Advisor: Amit Kaushal, akaushal@stanford.edu
  • Student Services Administrator: Darlene Lazar, 135 Huang, dlazar@stanford.edu

Computational techniques are now being used to ask and answer fundamental questions in biology and medicine in ways never before possible. The Biomedical Computation (BMC) major allows students to focus on this exciting interdisciplinary field – the use of advanced computational techniques in biology and medicine.

BMC is an IDP, or interdisciplinary program, with its home in the School of Engineering. Students who major in BMC will gain a rigorous foundation in the many component fields that go into biomedical computation, including computer science, math and statistics, biology, and chemistry. Each student then has the opportunity to pursue one of four tracks most suited to his or her interests.

Our graduates have gone on to pursue a wide range of paths after graduation. Many of our students have chosen to continue their studies and pursue advanced degrees in various fields, including bioinformatics, bioengineering, or any of the pure biological or computational sciences. We have also had a number of students enroll in medical school or MD/PhD programs. BMC graduates have also ended up in fields a bit farther away from biomedical computation, such as law school, management consulting, and others. BMC gives students a solid foundation in a number of different fields, and students have the ability to pursue a variety of career paths in any of the fields that make up the major.

[edit] COMPONENTS OF BMC

BMC Core: Math, Science, Engineering Fundamentals, and TIS

All BMC students take courses to get a solid foundation in the component disciplines of biomedical computation. Most of these courses are typically taken during freshman and sophomore year. These courses include:
Math: MATH 41, 42, STATS 116 (or equivalent), and one additional math course specific to your track.
Chemistry: CHEM31A+B or 31X or ENGR 31; CHEM 33
Biology: BIO Core or Human Biology Core (each is a 3-quarter sequence, ideally taken in sophomore year)
Physics: PHYSICS 41
Computer Science: CS 107; CS106B or X; CS103; CS 161
Engineering Fundamentals: CS 106B or X (see above) plus one additional elective (may not be CS 106A; see Chapter 3, Figure 3-4 for list of other SoE approved courses)
Technology in Society (TIS): One course required; see list of SoE approved courses in Chapter 3, Figure 3-3. HUMBIO 174, Foundations of Bioethics (3 units, Wtr, prerequisite of HUMBIO core), is an option to fulfill this requirement only for BMC majors.
Please see the program sheets for the exact course list.
Tracks

For the upper division courses in the major, a student must choose between one of the four tracks of BMC. The four tracks are

  • Informatics
  • Simulation
  • Cellular/Molecular
  • Organs/Organ Systems

Two of the tracks, Informatics and Simulation, put a bit more emphasis on the computational aspects of the discipline, while the other two, Cellular/Molecular and Organs/Organ Systems, provide more depth in biology.

Each of the tracks consists of a core of about three to five courses. These are courses that provide students the core knowledge related to their in-depth area of study. The tracks also have elective requirements, to ensure students gain breadth in upper division courses as well. The entire track portion of BMC is composed of nine to ten courses in total. Lists of electives can be found on the BMC website.

[edit] BMC Depth: Research, Writing in the Major, and Capstone Class

Research: Every BMC student must complete 6 units of directed research under a faculty member. This requirement of research is fairly unique to BMC among majors at Stanford. It allows our students to work on cutting-edge projects as a part of their undergraduate curriculum. This research typically occurs during the junior or senior year, and may be undertaken with faculty members from any School at Stanford. The main requirement is that the student be doing actual, hands-on biomedical computation as a part of the research project. The student must get approval from the BMC Program Directors before undertaking his or her research project.

WIM: The Writing in the Major requirement gives students an opportunity to learn to effectively communicate ideas in their fields of study. In BMC, there are two ways to satisfy this requirement:
1. Students may fulfill the WIM requirement by writing a ~15 page technical report concurrently with performing the research for the research requirement. This report is in the form of a technical publication about the students work, and is completed under supervision of your research mentor and the School of Engineering writing tutors. For this option, student can either 1) Enroll in least 3 of the 6 research units as CS191W, or 2) enroll in 5 units of research and 1 unit of E199W.
2. Students wishing to satisfy their WIM requirement independently of their research work may enroll in CS272.

Capstone Class: The BMC Capstone class gives students the chance to take a rigorous course that thoroughly integrates various aspects of biology and computation. This course is typically taken during junior or senior year. Currently, this requirement is satisfied by one of the following courses: CS270, CS273A, CS274, CS275, CS278, or CS279

ADVISING IN BMC

There are two types of advisors for the major: an academic advisor and a research advisor. The academic advisor is the person who oversees your path through BMC. In is necessary to have found an academic advisor in order to declare the major. Because BMC is in the School of Engineering, the student’s academic advisor must have an appointment in the School of Engineering. The one major commitment that this advisor makes in BMC that is different from other majors is that, in the case that the BMC student has trouble finding a research mentor, the academic advisor agrees that the student can work in his or her lab to fulfill the BMC research requirement.

The other advisor is the research mentor. Because there is interesting biomedical computation work being done throughout Stanford, not just in the School of Engineering, we place no restrictions as to where within Stanford the faculty mentor conducts his or her research. It is not necessary to have a research advisor at the time of declaring; many of our students do not.
It is acceptable for the same faculty member to serve as both the academic and research advisor for a BMC student.

For additional information about the major, and for step-by-step instructions on how to declare, please visit the BMC website at http://bmc.stanford.edu. If you have further questions, please contact the student advisor for the major, Amit Kaushal, at akaushal@stanford.edu.

[edit] PROGRAM OPTIONS

If I do BMC can I also…
Be Premed?
Yes. This requires taking about six additional chemistry, physics, and biology lab courses. While we can offer some advice here, it is important to talk to a premed advisor to cover which additional courses you need to take.
Study abroad?
Absolutely! Though the major requirements are many, it is quite possible to go abroad. The earlier you start planning, the easier this will be.
Do an Honor thesis?
Yes. The full requirements for honors are described in Chapter 6 and on the BMC website. Please contact BMC Advisor Amit Kaushal (akaushal@stanford.edu) if you are interested in this option.
Add an additional major or minor in something else?
Yes. While the major is demanding, some students have managed to squeeze in other areas of study as well. Some students have asked about double-majoring or minoring in Computer Science or Biology. It does not make much sense to do so, since the BMC major has a large number of courses from these departments already. BMC majors can tailor their curriculum so that they are quite well trained in either of these disciplines.
Coterm?
Absolutely. Stanford offers students the opportunity to study an additional year or so and obtain a coterminal Master’s degree. Many of our students have gone on to coterm in various departments at Stanford. Please contact the department in which you wish to coterm in your junior year – requirements vary from department to department, and this will leave enough time to plan for the application process and the courses you might have to take before enrolling.

[edit] Instructions for Declaring BMC as a Major

1. Gather information about the major by talking to students and professors.
2. Design a 4-year plan based on the samples previous pages.
3. Print a copy of your transcript from Axess.
4. Select an advisor (choose from the list of faculty listed under “BMC Faculty Advisors” on the BMC website at http://bmc.stanford.edu).
5. Download the BSE:BMC program sheet from the School of Engineering web site (http://ughb.stanford.edu).
6. Meet with your advisor to review the 4-year plan
7. Based on your plan, fill out your program sheet
8. Meet with either Prof. Russ Altman or Prof. Daphne Koller to get approval; have them sign your program sheet.
9. Turn in your completed and signed Program Sheet, 4-Year Plan, and an unofficial Stanford transcript to Darlene Lazar in 135 Huang. She will review for completion. You must then declare your major in Axess:
a. Select “Engineering” as your Major
b. Select “BMC” as your subplan
c. Ask Darlene (dlazar@stanford.edu) to approve your major in PeopleSoft
10. When your major is approved, Darlene will notify you via email.



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