[log]
logfile	Log.txt

[exon_annotation]
probeset_annotation	MoEx-1_0-st-v1.na24.mm8.probeset.csv
pgf_file	MoEx-1_0-st-v1.r2.pgf
clf_file	MoEx-1_0-st-v1.r2.na24.clf
num_cells	6553600
cell_dim	2560

[exon_data]
folder	MouseData/
exon_cel_files	moex_wta_brain_A.CEL,moex_wta_brain_B.CEL,moex_wta_brain_C.CEL,moex_wta_embryo_A.CEL,moex_wta_embryo_B.CEL,moex_wta_embryo_C.CEL,moex_wta_heart_A.CEL,moex_wta_heart_B.CEL,moex_wta_heart_C.CEL,moex_wta_kidney_A.CEL,moex_wta_kidney_B.CEL,moex_wta_kidney_C.CEL,moex_wta_liver_A.CEL,moex_wta_liver_B.CEL,moex_wta_liver_C.CEL,moex_wta_lung_A.CEL,moex_wta_lung_B.CEL,moex_wta_lung_C.CEL,moex_wta_muscle_A.CEL,moex_wta_muscle_B.CEL,moex_wta_muscle_C.CEL,moex_wta_ovary_A.CEL,moex_wta_ovary_B.CEL,moex_wta_ovary_C.CEL,moex_wta_spleen_A.CEL,moex_wta_spleen_B.CEL,moex_wta_spleen_C.CEL,moex_wta_testicle_A.CEL,moex_wta_testicle_B.CEL,moex_wta_testicle_C.CEL,moex_wta_thymus_A.CEL,moex_wta_thymus_B.CEL,moex_wta_thymus_C.CEL

[output]
output_model_fit	MATBackgroundParameters.txt
output_all_bkgd_correct_norm_probes	true
bkgd_correct_norm_probes_file	Fitted_Mouse

[model]
array_type	exon
method	mat
train_model	true
mat_training_probe_type	background
normalization_method	none