How to do Biostatistics (with R and Rcmdr)

A short course brought to you by Lane Library and SPCTRM

Day 1 Using R for Exploratory Data Analysis

Morning slides are here:

https://www.stanford.edu/~balise/SPCTRM/HowToDay1morning20070902.ppt

 

Afternoon slides are here:

https://www.stanford.edu/~balise/SPCTRM/HowToDay1afternoon20070902.ppt

https://www.stanford.edu/~balise/SPCTRM/jitterSunflower.ppt

 

The datasets are here:

https://www.stanford.edu/~balise/SPCTRM/diabetic.xls 

https://www.stanford.edu/~balise/SPCTRM/gad.xls 

https://www.stanford.edu/~balise/SPCTRM/obese.xls 

 

The code is here:

https://www.stanford.edu/~balise/SPCTRM/assignment.r

 

 

Day 2 Analyzing continuous outcome variables

Morning slides are here:

https://www.stanford.edu/~balise/SPCTRM/HowToDay2Morning20070910.ppt

 

Afternoon slides are here:

https://www.stanford.edu/~balise/SPCTRM/HowToDay2Afternoon20070910.ppt

 

The datasets are here:

https://www.stanford.edu/~balise/SPCTRM/worms.txt

https://www.stanford.edu/~balise/SPCTRM/worms.missing.txt

https://www.stanford.edu/~balise/SPCTRM/angina.xls 

https://www.stanford.edu/~balise/SPCTRM/asymptotic.txt

https://www.stanford.edu/~balise/SPCTRM/diabetic.xls 

https://www.stanford.edu/~balise/SPCTRM/fev.xls 

https://www.stanford.edu/~balise/SPCTRM/anemia.xls 

https://www.stanford.edu/~balise/SPCTRM/memory.xls 

https://www.stanford.edu/~balise/SPCTRM/eye.xls 

https://www.stanford.edu/~balise/SPCTRM/pain.xls 

https://www.stanford.edu/~balise/SPCTRM/lesion.xls 

 

 

or as one zip archive

https://www.stanford.edu/~balise/SPCTRM/day2data.zip

 

The code is here:

https://www.stanford.edu/~balise/SPCTRM/day2.r

 

 

Day 3 Analyzing categorical outcome variables

 

Slides are here:

https://www.stanford.edu/~balise/SPCTRM/HowToDay3from20070916a.ppt

 

The datasets are here:

https://www.stanford.edu/~balise/SPCTRM/gi.xls

https://www.stanford.edu/~balise/SPCTRM/response.xls

https://www.stanford.edu/~balise/SPCTRM/aml.xls

 

The code is here:

https://www.stanford.edu/~balise/SPCTRM/day3.r

 

 

 

Mac Users read how to install Rcmdr here:

http://socserv.mcmaster.ca/jfox/Misc/Rcmdr/installation-notes.html

I think the trick is to just start X11 before you type library(Rcmdr).

 

If you don not have X11 installed…  This comes from Dr. Markus Britschgi. (Thank you!)