Code Funding Group News NPSL Home Publications Prof. Shenoy Talks

Updated: 20 May 2015

Journal Papers (Google Scholar PubMed)

  1. Pandarinath C, Gilja V, Blabe CH, Nuyujukian P, Sarma AA, Sorice BL, Eskandar EN, Hochberg LR, Henderson JM*, Shenoy KV* (2015) Neural population dynamics in human motor cortex during movements in people with ALS. eLife. In Press. [from NPTL]
  2. Kao JC, Nuyujukian P, Cunningham JP, Churchland MM, Ryu SI, Shenoy KV (2015) Single-trial dynamics of motor cortex and their applications to brain-machine interfaces. Nature Communications. In press.
  3. Blabe C, Gilja V, Chestek CA, Shenoy KV, Anderson K, Henderson JM (2015) Assessment of brain-machine interfaces from the perspective of people with paralysis. Journal of Neural Engineering. In press. [from NPTL]
  4. Sussillo D, Churchland MM, Kaufman MT, Shenoy KV (2015) A neural network that finds a naturalistic solution for the production of muscle activity. Nature Neuroscience. In press.
  5. Kaufman MT, Churchland MM, Ryu SI, Shenoy KV (2015) Vacillation, indecision and hesitation in moment-by-moment decoding of monkey motor cortex. eLife. 4:e04677. pdf supp mats movie1 movie2 movie3
  6. Stavisky SD, Kao JC, Nuyujukian P, Ryu SI, Shenoy KV (2015) A high performing brain-machine interface driven by low-frequency local field potentials alone and together with spikes. Journal of Neural Engineering. 12:036009. pdf supp mats movie1 movie2 JNE video abstract
  7. Christie B, Tat D, Irwin Z, Gilja V, Nuyujukian P, Foster J, Ryu SI, Shenoy KV, Thompson D, Chestek CA (2015) Comparison of spike sorting and thresholding of voltage waveforms for intracortical brain-machine interface performance. Journal of Neural Engineering.12:006019. pdf
  8. Nuyujukian P, Fan JM, Kao JC, Ryu SI, Shenoy KV (2015) A high-performance keyboard neural prosthesis enabled by task optimization. IEEE Transactions on Biomedical Engineering. 62:21-29. pdf
  9. Nuyujukian P, Kao JC, Fan J, Stavisky S, Ryu SI, Shenoy KV (2014) Performance sustaining intracortical neural prostheses. Journal of Neural Engineering. 11:066003. pdf supp mats JNE video abstract
  10. Foster JD, Nuyujukian P, Freifeld O, Gao H, Walker R, Ryu SI, Meng TH, Murmann B, Black MJ, Shenoy KV (2014) A freely-moving monkey treadmill model. Journal of Neural Engineering. 11:046020. pdf supp mats JNE video abstract
  11. Bishop WE, Chestek CA, Gilja V, Nuyujukian P, Foster JD, Ryu SI, Shenoy KV, Yu BM (2014) Self-recalibrating classifiers for intracortical brain computer interfaces. Journal of Neural Engineering. 11:026001. pdf
  12. Kaufman MT, Churchland MM, Ryu SI, Shenoy KV (2014) Cortical activity in the null space: permitting preparation without movement. Nature Neuroscience. 17:440-448. pdf supp mats Sanger TD, Kalaska JF (2014) News & Views: "Crouching Tiger, Hidden Dimensions." Nature Neurocience. 17:338-340. pdf
  13. Ames KC, Ryu SI, Shenoy KV (2014) Neural dynamics of reaching following incorrect or absent motor preparation. Neuron. 81:438-451. pdf supp mats movie1 movie2 movie3
  14. Fan JM, Nuyujukian P, Kao JC, Chestek CA, Ryu SI, Shenoy KV (2014) Intention estimation in brain-machine interfaces. Journal of Neural Engineering. 11:016004. pdf
  15. Shenoy KV, Carmena JM (2014) Combining decoder design and neural adaptation in brain-machine interfaces. Neuron. 84:665-680. pdf video abstract by Neuron: "Shenoy and Carmena introduce the concept of a brain-machine interface, how to desigin a decoder algorithm to convert neural activity into prosthetic control signals, and how to engage neural adaptation and plasticity. Combining decoder design and neural adaptation may lead to better BMI performance, robustness, and generalization." [Review]
  16. Kao JC, Stavisky SD, Sussillo D, Nuyujukian P, Shenoy KV (2014) Information systems opportunities in brain-machine interface decoders. Proceedings of the IEEE. 102:666-682. pdf [Review]
  17. Shenoy KV (2014) Prostheses: hopes & hurdles. Cell. Voices article. 156:861-863. pdf [Review]
  18. Mante V*, Sussillo D*, Shenoy KV, Newsome WT (2013) Context-dependent computation by recurrent dynamics in prefrontal cortex. Nature. 503:78-84. pdf supp mats Erlich JC, Brody CD (2013) News & Views: "What to do and how." Nature. 503:45-47. pdf
  19. Cowley BR, Kaufman MT, Butler ZS, Churchland MM, Ryu SI, Shenoy KV, Yu BM (2013) DataHigh: Graphical user interface for visualizing and interacting with high-dimensional neural activity. Journal of Neural Engineering.10:066012. pdf
  20. Kaufman MT, Churchland MM, Shenoy KV (2013) The roles of monkey M1 neuron classes in movement preparation and execution. Journal of Neurophysiology. 110:817-825. pdf
  21. Ozden I, Wang J, Lu Y, May T, Lee J, Goo W, O’Shea DJ, Kalanithi P, Diester I, Diagne M, Deisseroth K, Shenoy KV, Nurmikko AV (2013) A Coaxial Optrode As Multifunction Write-Read Probe for Optogenetic Studies in Non-Human Primates. Journal of Neuroscience Methods. 291:142-154. pdf
  22. Dethier J*, Nuyujukian P*, Ryu SI, Shenoy KV, Boahen K (2013) Design and validation of a real-time spiking-neural-network decoder for brain-machine interfaces. Journal of Neural Engineering. 10:036008 (12pp). pdf
  23. Chestek CA, Gilja V, Blabe CH, Foster BL, Shenoy KV, Parvizi J, Henderson JM (2013) Hand posture classification using electrocorticography signals in the gamma band over human sensorimotor brain areas. Journal of Neural Engineering. 10:02602 (11pp). pdf [from NPTL]
  24. Shenoy KV, Sahani M, Churchland MM (2013) Cortical control of arm movements: A dynamical systems perspective. Annual Review of Neuroscience. 36:337-359. pdf [Review]
  25. Gilja V*, Nuyujukian P*, Chestek CA, Cunningham JP, Yu BM, Fan JM, Churchland MM, Kaufman MT, Kao JC, Ryu SI, Shenoy KV (2012) A high-performance neural prosthesis enabled by control algorithm design. Nature Neuroscience. 15:1752-1757. pdf supp mats movie 1 movie 2 movie 3 movie 4 movie 5 movie 6
  26. Churchland MM*, Cunningham JP*, Kaufman MT, Foster JD, Nuyujukian P, Ryu SI, Shenoy KV (2012) Neural population dynamics during reaching. Nature. 487:51-56. pdf supp mats movie 1 movie 2 movie 3 movie 4 movie 5
  27. Gao H, Walker RM, Nuyujukian P, Makinwa KAA, Shenoy KV, Murmann B, Meng TH (2012) HermesE: A 96-channel full data rate direct neural interface in 0.13 um CMOS. IEEE Journal of Solid State Circuits. 47:1043-1054. pdf
  28. Zhao M, Batista AP, Cunningham JP, Chestek CA, Rivera-Alvidrez Z, Kalmar R, Ryu SI, Shenoy KV, Iyengar S (2012) An L1-regularized logistic model for detecting short-term neuronal interactions. Journal of Computational Neuroscience. 32:479-497. pdf
  29. Sussillo D, Nuyujukian P, Fan JM, Kao JC, Stavisky SD, Ryu SI, Shenoy KV (2012) A recurrent neural network for closed-loop intracortical brain-machine interface decoders. Journal of Neural Engineering. 9:026027. pdf supp mats Fig. 1: mean cursor speed for the velocity Kalman filter as the output gain varies. Fig. 2: mean distance to target for the velocity Kalman filter as the output gain varies. movie 1 Movie demonstrating the quality of the FORCE decoder. Monkey J, 2/4/2011. movie 2 Movie demonstrating the quality of the FORCE decoder. Monkey L, 2/10/2011.
  30. Shenoy KV, Nurmikko AV (2012) Brain models enabled by next-generation neurotechnology. Pulse Magazine, IEEE Engineering in Medicine and Biology Society. 3: 31-36. pdf Schnitzer JJ (2012) 2010 DARPA neural engineering, science, and technology forum [Guest Editorial]. Pulse Magazine, IEEE EMBS. 3:10. pdf [Review]
  31. Afshar A, Santhanam G, Yu BM, Ryu SI, Sahani M*, Shenoy KV* (2011) Single-trial neural correlates of arm movement preparation. Neuron. 71:555-564. pdf supp mats Graziano MSA (2011) Previews: "New insights into motor cortex." Neuron. 71:387-388. pdf
  32. Chestek CA, Gilja V, Nuyujukian P, Foster JD, Fan JM, Kaufman MT, Churchland MM, Rivera-Alvidrez Z, Cunningham JP, Ryu SI, Shenoy KV (2011) Long-term stability of neural prosthetic control signals from silicon cortical arrays in rhesus macaque motor cortex. Journal of Neural Engineering. 8:045005. pdf
  33. O'Driscoll S, Shenoy KV, Meng TH (2011) Adaptive resolution ADC array for an implantable neural sensor. IEEE Transactions on Biomedical Circuits and Systems. 5:120-130. pdf
  34. Cunningham JP, Nuyujukian P, Gilja V, Chestek CA, Ryu SI, Shenoy KV (2011) A closed-loop human simulator for investigating the role of feedback-control in brain-machine interfaces. Journal of Neurophysiology. 105:1932-1949. pdf
  35. Diester I, Kaufman MT, Mogri M, Pashaie R, Goo W, Yizhar O, Ramakrishnan C, Deisseroth K, Shenoy KV (2011) An optogenetic toolbox designed for primates. Nature Neuroscience. 14:387-397. pdf supp mats
  36. Gilja V, Chestek CA, Diester I, Henderson JM, Deisseroth K, Shenoy KV (2011) Challenges and opportunities for next-generation intra-cortically based neural prostheses. IEEE Transactions on Biomedical Engineering. 58:1891-1899. pdf [Review]
  37. Churchland MM, Cunningham JP, Kaufman MT, Ryu SI, Shenoy KV (2010) Cortical preparatory activity: Representation of movement or first cog in a dynamical machine? Neuron. 68:387-400. pdf
  38. Kaufman MT, Churchland MM, Santhanam G, Yu BM, Afshar A, Ryu SI, Shenoy KV (2010) The roles of monkey premotor neuron classes in movement preparation and execution. Journal of Neurophysiology. 104:799-810. pdf
  39. Miranda H, Gilja V, Chestek CA, Shenoy KV, Meng TH (2010) HermesD: A high-rate long-range wireless transmission system for simultaneous multichannel neural recording applications. IEEE Transactions on Biomedical Circuits and Systems. 4:181-191. pdf
  40. Churchland MM*, Yu BM*, Cunningham JP, Sugrue LP, Cohen MR, Corrado GS, Newsome WT, Clark AM, Hosseini P, Scott BB, Bradley DC, Smith MA, Kohn A, Movshon JA, Armstrong KM, Moore T, Chang SW, Snyder LH, Lisberger SG, Priebe NJ, Finn IM, Ferster D, Ryu SI, Santhanam G, Sahani M, Shenoy KV (2010) Stimulus onset quenches neural variability: a widespread cortical phenomenon. Nature Neuroscience. 13:369-378. pdf supp mats supp video 1 supp video 2 supp video 3 supp video 4
  41. Gilja V*, Chestek CA*, Nuyujukian P, Foster JD, Shenoy KV (2010) Autonomous head-mounted electrophysiology systems for freely-behaving primates. Current Opinion in Neurobiology. 20:676-686. pdf Schuman E, Zhuang X, (2010) Editorial overview -- Special section on New Technologies. Current Opinion in Neurobiology. 20:608-609. pdf [Review]
  42. Cunningham JP, Gilja V, Ryu SI, Shenoy KV (2009) Methods for estimating neural firing rates and their application to brain-machine interfaces. Neural Networks, special issue on brain-machine interfaces. 22:1235-1246. pdf
  43. Chestek CA*, Gilja V*, Nuyujukian P, Kier R, Solzbacher F, Ryu SI, Harrison RA, Shenoy KV (2009) HermesC: Low-power wireless neural recording system for freely moving primates. IEEE TNSRE, special issue on wireless neurotechnology. 17:330-338. pdf Judy JW, Markovic D (2009) Guest Editorial -- Special section on wireless neural interfaces. IEEE TNSRE. 17:309-311. pdf
  44. Harrison RR, Kier RJ, Chestek CA, Gilja V, Nuyujukian P, Ryu SI, Gregor B, Solzbacher F, Shenoy KV (2009) Wireless neural recording with single low-power integrated circuit. IEEE TNSRE, special issue on wireless neurotechnology. 17:322-329. pdf Judy JW, Markovic D (2009) Guest Editorial -- Special section on wireless neural interfaces. IEEE TNSRE. 17:309-311. pdf
  45. Santhanam G, Yu BM, Gilja V, Afshar A, Ryu SI, Sahani M, Shenoy KV (2009) Factor-analysis methods for higher-performance neural prostheses. Journal of Neurophysiology. 102:1315-1330. pdf
  46. Yu BM, Cunningham JP, Santhanam G, Ryu SI, Shenoy KV*, Sahani M* (2009) Gaussian-process factor analysis for low-dimensional single-trial analysis of neural population activity. Journal of Neurophysiology. 102:614-635. pdf
  47. Ryu SI, Shenoy KV (2009) Human cortical prostheses: Lost in translation? Neurosurgical Focus, special issue on advances in brain-machine interfaces, Parag Patil guest editor. 27:E5. pdf [Review]
  48. Cunningham JP, Yu BM, Gilja V, Ryu SI, Shenoy KV (2008) Toward optimal target placement for neural prosthetic devices. Journal of Neurophysiology. 100:3445-3457. pdf
  49. Kemere C, Santhanam G, Yu BM, Afshar A, Ryu SI, Meng TH, Shenoy KV (2008) Detecting neural state transitions using hidden Markov models for motor cortical prostheses. Journal of Neurophysiology. 100:2441-2452. pdf
  50. Batista AP, Yu BM, Santhanam G, Ryu SI, Afshar A, Shenoy KV (2008) Cortical neural prosthesis performance improves when eye position is monitored. IEEE Transactions in Neural Systems and Rehabilitation Engineering. 16:24-31. pdf
  51. Linderman MD, Santhanam G, Kemere CT, Gilja V, O'Driscoll S, Yu BM, Afshar A, Ryu SI, Shenoy KV, Meng TH (2008) Signal processing challenges for neural prostheses. IEEE Signal Processing Magazine, special issue on brain-computer interfaces. 25:18-28. pdf Sajda P, Muller K-R, Shenoy KV (2008) Brain-computer interfaces [from the guest editors]. IEEE Signal Processing Magazine. 25:16-17. pdf [Review]
  52. Santhanam G*, Linderman MD*, Gilja V, Afshar A, Ryu SI, Meng TH, Shenoy KV (2007) HermesB: A continuous neural recording system for freely behaving primates. IEEE Transactions in Biomedical Engineering. 54:2037-2050. pdf
  53. Chestek CA*, Batista AP*, Santhanam G, Yu BM, Afshar A, Cunningham JP, Gilja V, Ryu SI, Churchland MM, Shenoy KV (2007) Single-neuron stability during repeated reaching in macaque premotor cortex. Journal of Neuroscience. 27:10742–10750. pdf supp mats
  54. Achtman N*, Afshar A*, Santhanam G, Yu BM, Ryu SI, Shenoy KV (2007) Free-paced high-performance brain-computer interfaces. Journal of Neural Engineering. 4:336-347. pdf
  55. Batista AP, Santhanam G, Yu BM, Ryu SI, Afshar A, Shenoy KV (2007) Reference frames for reach planning in macaque dorsal premotor cortex. Journal of Neurophysiology. 98:966-983. pdf
  56. Churchland MM, Shenoy KV (2007) Temporal complexity and heterogeneity of single-neuron activity in premotor and motor cortex. Journal of Neurophysiology. 97:4235-4257.pdf
  57. Yu BM, Kemere C, Santhanam G, Afshar A, Ryu SI, Meng TH, Sahani M*, Shenoy KV* (2007) Mixture of trajectory models for neural decoding of goal-directed movements. Journal of Neurophysiology. 97:3763-3780. Cover article. pdf
  58. Churchland MM, Shenoy KV (2007) Delay of movement caused by disruption of cortical preparatory activity. Journal of Neurophysiology. 97:348-359. pdf
  59. Churchland MM, Yu BM, Sahani M, Shenoy KV (2007) Techniques for extracting single-trial activity patterns from large-scale neural recordings. Current Opinion in Neurobiology, special issue on new technologies. 17:609-618. pdf [Review]
  60. Churchland MM, Afshar A, Shenoy KV (2006) A central source of movement variability. Neuron. 52:1085-1096. pdf supp mat Nature News & Views section --- Dell H (2007) Hit and miss. Nature. 445:36. url News articles lists selected items (e.g., Scientific American, BBC News, New Scientist)
  61. Churchland MM, Santhanam G, Shenoy KV (2006) Preparatory activity in premotor and motor cortex reflects the speed of the upcoming reach. Journal of Neurophysiology. 96:3130-3146. pdf Cisek P (2006) Preparing for speed. Focus on: "Preparatory activity in premotor and motor cortex reflects the speed of the upcoming reach." Journal of Neurophysiology. 96:2842-2843. pdf
  62. Santhanam G*, Ryu SI*, Yu BM, Afshar A, Shenoy KV (2006) A high-performance brain-computer interface. Nature. 442:195-198. pdf supp mats video1 video2 video3 NATURE WEB FOCUS (url), Brain-Machine Interfaces introduction: "Brain-machine interfaces promise to aid paralyzed patients by re-routing movement-related signals around damaged parts of the nervous system. A new study in Nature demonstrates a human with spinal injury manipulating a screen cursor and robotic devices by thought alone (Hochberg et al. Nature 442:164-171, 2006). Implanted electrodes in his motor cortex recorded neural activity, and translated it into movement commands. A second study, in monkeys, shows that brain-machine interfaces can operate at high speed, greatly increasing their clinical potential (Santhanam et al. Nature 442:195-198, 2006). This Nature Web Focus includes exclusive interviews and video footage of experiments, alongside papers that paved the way for these recent advances." Nature News & Views --- Scott SH (2006) Neuroscience: Converting thoughts into action. Nature 442:141-142. pdf Nature News Features --- Abbott A (2006) Neuroprosthetics: In search of the sixth sense. Nature 442:125-127. pdf Nature Editorial ---  Is this the bionic man? Nature 442:109, 2006. pdf Nature News --- Hopkin M (2006) Bionic brains become a reality html Nature Video Streaming --- Brain Machine Interfaces. videos Nature Podcast --- Smith C & Lacey A (2006) audio transcript News articles lists selected items (e.g., NY Times, The Economist, NPR Talk of the Nation Science Friday) Barton S (2006) Neurological disorders: Mind over machine. Nature Reviews Neuroscience 7:682-683. pdf
  63. Churchland MM, Yu BM, Ryu SI, Santhanam G, Shenoy KV (2006) Neural variability in premotor cortex provides a signature of motor preparation. Journal of Neuroscience. 26(14):3697-3712. pdfsupp mats
  64. Zumsteg ZS, Kemere C, O'Driscoll S, Santhanam G, Ahmed RE, Shenoy KV, Meng TH (2005) Power feasibility of implantable digital spike sorting circuits for neural prosthetic systems. IEEE Transactions in Neural Systems and Rehabilitation Engineering. 13:272-279 pdf
  65. Kemere C, Shenoy KV, Meng TH (2004) Model-based neural decoding of reaching movements: a maximum likelihood approach. IEEE Transactions on Biomedical Engineering. 51:925-932 pdf
  66. Shenoy KV, Meeker D, Cao S, Kureshi SA, Pesaran B, Mitra P, Buneo C A, Batista AP, Burdick JW, Andersen RA (2003) Neural prosthetic control signals from plan activity. NeuroReport 14:591-596. pdf
  67. Shenoy KV, Crowell JA, Andersen RA (2002) Pursuit-Speed Compensation in Cortical Area MSTd. Journal of Neurophysiology. 88:2630-2647. pdf
  68. Sugihara H, Murakami I, Shenoy KV, Andersen RA, Komatsu H (2002) Response of MSTd neurons to simulated 3D-orientation of rotating planes. Journal of Neurophysiology 87:273-285. pdf
  69. Shenoy KV, Bradley DC, Andersen RA (1999) Influence of gaze rotation on the visual response of primate MSTd neurons. Journal of Neurophysiology 81:2764-2786. pdf
  70. Crowell JA, Banks MS, Shenoy KV, Andersen RA (1998) Visual self-motion perception during head turns. Nature Neuroscience 1:732-737. pdf Nature Neuroscience News & Views --- Warren WH (1998) Perception of heading is a brain in the neck. Nature Neuroscience 1:647-649. pdf
  71. Wang H, Luo J, Shenoy KV, Fonstad Jr. CG, Psaltis D (1997) Monolithic integration of SEEDs and VLSI GaAs circuits by epitaxy on electronics. IEEE Photon. Technol. Lett. 9:607-609. pdf
  72. Bradley DC, Maxwell M, Andersen RA, Banks MS, Shenoy KV (1996) Neural mechanisms for heading perception in primate visual cortex. Science 273:1544-1547. pdf Science --- Barinaga M (1996) Neuroscience: Researchers find neurons that may help us navigate. Science 273:1489-1490. pdf
  73. Braun EK, Shenoy KV, Fonstad Jr. CG, Mikkelson JM (1996) Elevated temperature stability of GaAs digital integrated circuits. IEEE Electron Device Lett. 17:37-39. pdf
  74. Shenoy KV, Fonstad Jr. CG, Grot AC, Psaltis D (1995) Monolithic optoelectronic circuit design and fabrication by epitaxial growth on commercial VLSI GaAs MESFETs. IEEE Photon. Technol. Lett. 7:508-510. pdf
  75. Grot AC, Psaltis D, Shenoy KV, Fonstad Jr. CG (1994) Integration of LEDs and GaAs circuits by MBE regrowth. IEEE Photon. Technol. Lett. 6:819-821. pdf
  76. Shenoy KV, Fonstad Jr. CG, Mikkelson JM (1994) High temperature stability of refractory-metal VLSI GaAs MESFETs. IEEE Electron Device Lett. 15:106-108. pdf
  77. McGrann JV, Shaw GL, Shenoy KV, Matthews RB (1994) Computation by symmetry operations in a highly structured model of the brain. Phys. Rev. E 49:5830-5839. pdf
  78. Shenoy KV, Kaufman J, McGrann JV, Shaw GL (1993) Learning by selection in the Trion model of cortical organization. Cerebral Cortex 3:239-248. pdf

Book chapters and Scholarpedia

  1. Shenoy KV (2014) Recording from many neurons simultaneously: From measurement to meaning. Chapter in The future of the brain: Essays by the world's leading neuroscientists. Princeton University Press. ISBN: 9780691162768. Pages 78-89. Princeton University Press url
  2. Shenoy KV, Chestek CA (2012) Neural Prosthetics. In Encyclopedia of Motor Control, edited by Daniel Wolpert, Scholarpedia. 7(3):11854. doi:10.4249/scholarpedia. url
  3. Shenoy KV, Kaufman MT, Sahani M, Churchland MM (2011) A dynamical systems view of motor preparation: Implications for neural prosthetic system design. Chapter 3 in Andrea M. Green, C. Elaine Chapman, John F. Kalaska, Franco Lepore, editors: Progress in Brain Research, Vol. 192, Amsterdam: The Netherlands. pp. 33-58. ISBN: 978-0-444-53355-5. Elsevier. pdf
  4. Yu BM, Santhanam G, Sahani M, Shenoy KV (2010) Neural decoding for motor and communication prostheses. Chapter in Statistical Signal Processing for Neuroscience, K.G. Oweiss editor. Elsevier. 219-263. pdf
  5. Yu BM, Cunningham JP, Shenoy KV, Sahani M (2008) Neural decoding of movements: From linear to nonlinear trajectory models. Neural Information Processing, M. Ishikawa et al. (Eds.): ICONIP 2007, Part I, LNCS. Springer-Verlag Berlin Heidelberg. ISBN 978-3-540-69154-9. 4984:586-595. pdf
  6. Mumbru J, Shenoy KV, Panotopoulos G, Ay S, An X, Mok F, Psaltis D (2005) Reconfigurable Neural-Prosthetics Processors. Toward Replacement Parts for the Brain Implantable Biomimetic Electronics as Neural Prostheses, TW Berger and DL Glanzman, editors. MIT Press, ISBN 0-262-02577-9. pp335-368. Andersen RA, Shenoy KV, Crowell JA, Bradley DC (2000) Neural mechanisms for self-motion perception in area MST. International Review of Neurobiology, Academic Press. 44:219-233.
  7. Andersen RA, Shenoy KV, Snyder LH, Bradley DC, Crowell JA (1999) The contributions of vestibular signals to the representations of space in the posterior parietal cortex. Annals of the New York Academy of Sciences 871:282-292.
  8. Andersen RA, Bradley DC, Shenoy KV (1996) Neural mechanisms for heading and structure-from-motion perception. Cold Spring Harbor Symposia on Quantitative Biology, Cold Spring Harbor Lab. Press. LXI:15-25.
  9. Leng X, McGrann JV, Quillfeldt JA, Shaw GL, Shenoy KV (1994) Learning and memory processes and the modularity of the brain. Neural Bases of Learning and Memory, J. Delacour, editor. World Scientific Press.

Theses

  1. Shenoy KV (1995) Monolithic optoelectronic VLSI design and fabrication for optical interconnects. Massachusetts Institute of Technology, Department of Electrical Engineering and Computer Science, Ph.D. Thesis. url

Conference Papers

  1. Stavisky SD, Kao JC, Sorokin J, Ryu SI, Shenoy KV (2015) System identification of brain-machine interface control using a cursor jump perturbation. Proc. of the 7th International IEEE EMBS Conference on Neural Engineering. Montpellier, France. 643-647. pdf
  2. Stavisky SD, Kao JC, Nuyujukian P, Ryu SI, Shenoy KV (2014) Hybrid decoding of both spike and low-frequency local field potentials for brain-machine interfaces. Proc. of the 36th Annual International Conference IEEE EMBS. Chicago, IL. 3041-3044. pdf "BRAIN Best Paper Award" winner (1st place) pdf
  3. Kao J, Nuyujukian P, Stavisky S, Ryu SI, Ganguli S, Shenoy KV (2013) Investigating the role of firing-rate normalization and dimensionality reduction on brain-machine interface robustness. Proc. of the 35th Annual International Conference IEEE EMBS. Osaka, Japan: 293-298. pdf
  4. Gilja V*, Nuyujukian P*, Chestek CA, Cunningham JP, Yu BM, Fan JM, Churchland MM, Kaufman MT, Ryu SI, Shenoy KV (2012) A brain machine interface control algorithm designed from a fedback control perspective. Proc. of the 34th Annual International Conference IEEE EMBS. San Diego, CA: 1318-1322. pdf
  5. Foster JD, Nuyujukian P, Freifeld O, Ryu SI, Black MJ*, Shenoy KV* (2012) A framework for relating neural activity to freely moving behavior. Proc. of the 34th Annual International Conference IEEE EMBS. San Diego, CA: 2736-2739. pdf
  6. Cowley BR, Kaufman MT, Churchland MM, Ryu SI, Shenoy KV, Yu BM (2012) DataHigh: Graphical user interface for visualizing and interacting with high-dimensional neural activity. Proc. of the 34th Annual International Conference IEEE EMBS. San Diego, CA: 4607-4610. pdf
  7. Macke J, Buesing L, Cunningham JP, Yu BM, Shenoy KV, Sahani M (2011) Empirical models of spiking in neural populations. Advances in Neural Information Processing Systems (NIPS) 24, edited by J. Shawe-Taylor, R.S. Zemel, P. Bartlett, F. Pereira, and K.Q. Weinberger. MIT Press, Cambridge, MA. pdf
  8. Petreska B, Yu BM, Cunningham JP, Santhanam G, Ryu SI, Shenoy KV, Sahani M (2011) Dynamical segmentation of single trials from population neural data. Advances in Neural Information Processing Systems (NIPS) 24, edited by J. Shawe-Taylor, R.S. Zemel, P. Bartlett, F. Pereira, and K.Q. Weinberger. MIT Press, Cambridge, MA. pdf
  9. Dethier J, Nuyujukian P, Elassaad S, Stewart T, Eliasmith C, Shenoy KV, Boahen K (2011) A brain-machine interface operating with a real-time spiking neural network control algorithm. Advances in Neural Information Processing Systems (NIPS) 24, edited by J. Shawe-Taylor, R.S. Zemel, P. Bartlett, F. Pereira, and K.Q. Weinberger. MIT Press, Cambridge, MA. pdf
  10. Nuyujukian P*, Fan JM*, Gilja V, Kalanithi PS, Chestek CA, Shenoy KV (2011) Monkey models for brain-machine interfaces: The need for maintaining diversity. Proc. of the 33rd Annual International Conference IEEE EMBS. Boston, MA: 1301-1305. pdf
  11. Diester I, Kaufman MT, Goo W, O'Shea DJ, Kalanithi PS, Deisseroth K, Shenoy KV (2011) Optogenetics and brain-machine interfaces. Proc. of the 33rd Annual International Conference IEEE EMBS. Boston, MA. In press.
  12. Walker RM, Gao H, Nuyujukian P, Makinwa K, Shenoy KV, Meng TH, Murmann B (2011) A 96-channel full data rate direct neural interface in 0.13 um CMOS. Proc. of the 2011 Symposium on VLSI Circuits (VLSIC). Kyoto, Japan: 144-145. pdf
  13. Foster JD, Freifeld O, Nuyujukian P, Ryu SI, Black MJ*, Shenoy KV* (2011) Combining wireless neural recording and video capture for the analysis of natural gait. Proc. of the 5th International IEEE EMBS Conference on Neural Engineering. Cancun, Mexico: 613-615. pdf
  14. Dethier J, Gilja V, Nuyujukian P, Elassaad S, Shenoy KV, Boahen K (2011) Spiking neural network decoder for brain-machine interfaces Proc. of the 5th International IEEE EMBS Conference on Neural Engineering. Cancun, Mexico: 396-399. pdf
  15. Rivera-Alvidrez Z, Kalmar R, Ryu SI, Shenoy KV (2010) Low-dimensional neural features predict muscle EMG signals. Proc. of the 32nd Annual International Conf. of the IEEE EMBS, Buenos Aires, Argentina: 6027-6033. pdf
  16. Chestek C*, Cunningham JP*, Gilja V, Nuyujukian P, Ryu SI, Shenoy KV (2009) Neural prosthetic systems: Current problems and future directions. Proc. of the 31st Annual International Conf. of the IEEE EMBS, Minneapolis, MN: 3369-3375. pdf
  17. Miranda H, Gilja V, Chestek C, Shenoy KV, Meng TH (2009) A high-rate long-range wireless transmission system for multichannel neural recording applications. Proc. of the IEEE International Symposium on Circuits and Systems (ISCAS), Taipei, Taiwan: 1265-1268. pdf
  18. Yu BM, Cunningham JP, Santhanam G, Ryu SI, Shenoy KV, Sahani M (2008) Gaussian-process factor analysis for low-dimensional single-trial analysis of neural population activity. Advances in Neural Information Processing Systems (NIPS) 21, MIT Press, Cambridge, MA. pdf
  19. Harrison RR, Kier RJ, Kim S, Rieth L, Warren DJ, Ledbetter NM, Clark GA, Solzbacher F, Chestek CA, Gilja V, Nuyujukian, Ryu SI, Shenoy KV (2008, talk) A wireless neural interface for chronic recording. Proc. of the IEEE Biomedical Circuits and Systems Conference, special session B3L-A "Revolutionising Prosthetics Lecture", Baltimore, MD. 125-128. pdf
  20. Bishop W, Yu BM, Santhanam G, Afshar A, Ryu SI, Shenoy KV (2008, talk) An efficient approximation for the real-time implementation of the mixture of trajectory models decoder. Proc. of the IEEE Biomedical Circuits and Systems Conference, special session B3L-A "Revolutionising Prosthetics Lecture", Baltimore, MD: 133-136. pdf
  21. Bishop W, Yu BM, Santhanam G, Afshar A, Ryu SI, Shenoy KV, Vogelstein J, Beaty J, Harshbarger S (2008) The use of a virtual integration environment for the real-time implementation of neural decode algorithms. Proc. of the 30th Annual International Conf. of the IEEE EMBS, Vancouver, British Columbia, Canada: 628-633. pdf
  22. Cunningham JP, Sahani M, Shenoy KV (2008) Fast gaussian process methods for point process intensity estimation. Proceedings of the 25th Annual International Conference on Machine Learning (ICML 2008), Omni Press, Helsinki, Finland: 192-199. pdf
  23. Harrison RR, Kier RJ, Greger B, Solzbacher F, Chestek CA, Gilja V, Nuyujukian P, Ryu SI, Shenoy KV (2008, talk) Wireless neural signal acquisition with single low-power integrated circuit. Proc. of the IEEE International Symposium on Circuits and Systems (ISCAS), Seattle, WA: 1748-1751. pdf
  24. Chestek CA, Gilja V, Nuyujukian P, Ryu SI, Kier RJ, Solzbacher F, Harrison RR, Shenoy KV. (2008, talk) HermesC: RF wireless low-power neural recording system for freely behaving primates. Proc. of the IEEE International Symposium on Circuits and Systems (ISCAS), Seattle, WA: 1752-1755. pdf
  25. Santhanam G, Yu BM, Gilja V, Ryu SI, Afshar A, Sahani M, Shenoy KV (2008, talk) A factor-analysis decoder for high-performance neural prostheses. Proc. of the IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP), Las Vegas, NV: 5208-5211. pdf
  26. unningham J, Yu BM, Shenoy KV, Sahani M (2008) Inferring neural firing rates from spike trains using Gaussian processes. Advances in Neural Information Processing Systems (NIPS) 20, Editors Platt J, Koller D, Singer Y, Roweis S. MIT Press, Cambridge, MA. pdf
  27. Shenoy KV, Santhanam G, Ryu SI, Afshar A, Yu BM, Gilja V, Linderman MD, Kalmar RS, Cunningham JP, Kemere CT, Batista AP, Churchland MM, Meng TH (2006, invited talk) Increasing the performance of cortically-controlled prostheses. Proc. of the 28th Annual International Conf. of the IEEE EMBS, New York, NY: 6652-6656. pdf
  28. Linderman MD, Gilja V, Santhanam G, Afshar A, Ryu SI, Meng TH, Shenoy KV (2006) An autonomous, broadband, multi-channel neural recording system for freely behaving primates. Proc. of the 28th Annual International Conf. of the IEEE EMBS, New York, NY: 1212-1215. pdf
  29. Gilja V, Linderman MD, Santhanam G, Afshar A, Ryu SI, Meng TH, Shenoy KV (2006, talk) Multiday electrophysiological recordings from freely behaving primates. Proc. of the 28th Annual International Conference of the IEEE EMBS, New York, NY: 5643-4656. pdf
  30. Linderman MD, Gilja V, Santhanam G, Afshar A, Ryu SI, Meng TH, Shenoy KV (2006, talk) Neural recording stability of chronic electrode arrays in freely behaving primates. Proc. of the 28th Annual International Conf. of the IEEE EMBS, New York, NY: 4387-4391. pdf
  31. Cunningham JP, Yu BM, Shenoy KV (2006) Optimal target placement for neural communication prosthses. Proc. of the 28th Annual International Conf. of the IEEE EMBS, New York, NY : 2912-2915. pdf
  32. Lee TT, Levi O, Cang J, Kaneko M, Stryker MP, Smith SJ, Shenoy KV, Harris JS (2006) Integrated optical sensors for chronic, minimally-invasive imaging of brain function. Proc. of the 28th Annual International Conf. of the IEEE EMBS, New York, NY: 1025-1028. pdf
  33. Yu BM, Shenoy KV, Sahani M (2006) Expectation propagation for inference in non-linear dynamical models with Poisson observations. Nonlinear Statistical Signal Processing Workshop, University of Cambridge , Cambridge, England
  34. O'Driscoll S, Meng TH, Shenoy KV, Kemere C (2006, talk) Neurons to Silicon: Implantable Prosthesis Processor. International Solid State Circuits Conference (ISSCC), session 30 (program number 30.1): 552-553 & 672. pdf
  35. Yu BM, Afshar A, Santhanam G, Ryu SI, Shenoy KV, Sahani M (2006, talk). Extracting dynamical structure embedded in neural activity. Neural Information Processing Systems (NIPS) 18, Editors Weiss Y, Scholkopf B, Platt J. MIT Press, Cambridge, MA. 1545-1552. pdf
  36. Santhanam G, Ryu SI, Yu BM, Afshar A, Shenoy KV (2005, talk) A high performance neurally-controlled cursor positioning system. IEEE Engineering in Medicine and Biology (EMBS) 2nd International Conference on Neural Engineering. 494-500. pdf
  37. Kemere C, Santhanam G, Yu BM, Ryu SI, Meng TH, Shenoy KV (2004) Model-based decoding of reaching movement for prosthetic systems. Proceedings of the 26th Annual International Conference of the IEEE EMBS, San Francisco , CA : 4524-4528. pdf
  38. Yu BM, Ryu SI, Santhanam G, Churchland MM, Shenoy KV (2004, talk) Improving neural prosthetic system performance by combining plan and peri-movement activity. Proceedings of the 26th Annual International Conference of the IEEE EMBS, San Francisco , CA : 4516-4519. pdf
  39. Santhanam G, Sahani M, Ryu SI, Shenoy KV (2004) An extensible infrastructure for fully automated spike sorting during online experiments. Proceedings of the 26th Annual International Conference of the IEEE EMBS, San Francisco , CA : 4380-4384. pdf
  40. Zumsteg ZS, Ahmed RE, Santhanam G, Shenoy KV, Meng TH (2004) Power feasibility of implantable digital spike-sorting circuits for neural prosthetic systems. Proceedings of the 26th Annual International Conference of the IEEE EMBS, San Francisco, CA : 4237-4240. pdf
  41. Watkins PT, Santhanam G, Shenoy KV, Harrison RR (2004, talk) Validation of adaptive threshold spike detector for neural recording. Proceedings of the 26th Annual International Conference of the IEEE EMBS, San Francisco , CA : 4079-4082. pdf
  42. Harrison RR, Santhanam G, Shenoy KV (2004, talk) Local field potential measurement with low-power analog integrated circuit. Proceedings of the 26th Annual International Conference of the IEEE EMBS, San Francisco , CA : 4067-4070. pdf
  43. Shenoy KV, Churchland MM, Santhanam G, Yu BM, Ryu SI (2003, invited talk) Influence of movement speed on plan activity in monkey pre-motor cortex and implications for high-performance neural prosthetic system design. Proceedings of the IEEE EMBS 25th Annual Meeting, Cancun , Mexico . 1897-1900. pdf
  44. Santhanam G, Shenoy KV (2003) Methods for estimating neural step sequences in neural prosthetic applications. Proceedings of the IEEE EMBS 1st International Conference on Neural Engineering. 344-347. pdf
  45. Kemere C, Santhanam G, Yu B, Shenoy KV, Meng T (2002, talk) Decoding of plan and peri-movement neural signals in prosthetic systems. Proceedings of the IEEE Workshop on Signal Processing Systems (SIPS'02). 276-283. pdf
  46. Aggarwal RJ, Shenoy KV, Fonstad Jr. CG (1995, invited talk) A technology for monolithic integration of high indium-fraction resonant tunneling diodes with commercial MESFET VLSI electronics. InP and Related Compounds. pdf
  47. Grot AC, Psaltis D, Shenoy KV, Fonstad Jr. CG (1994, invited plenary talk) Large scale integration of LEDs and GaAs circuits fabricated through MOSIS. ICO/OSA/SPIE/ LEOS International Conf. On Optical Computing.
  48. Grot AC, Psaltis D, Shenoy KV, Fonstad Jr. CG (1994, talk) Comparison of Si/CMOS and GaAs MESFET technologies for analog optoelectronic circuits. IEEE/LEOS Summer Topical Meeting on Integrated Optoelectronics. pdf
  49. Fonstad Jr. CG, Shenoy KV (1994; invited talk) Application specific OEICs fabricated using GaAs IC foundry services. IEEE/LEOS Summer Topical Meeting on Integrated Optoelectronics. pdf
  50. Grot AC, Psaltis D, Shenoy KV, Fonstad Jr. CG (1994, talk) GaAs optoelectronic winner-take-all circuit. OSA/IEEE/CLEO Annual Meeting.
  51. Shenoy KV, Nuytkens PR, Fonstad Jr. CG, Johnson GD, Goodhue WD, Donnelly JP (1993, talk) Optoelectronic VLSI circuit fabrication. IEEE/LEOS Annual Meeting. pdf
  52. Grot AC, Psaltis D, Shenoy KV, Fonstad Jr. CG (1993, talk) GaAs optoelectronic neuron circuits fabricated through MOSIS. OSA Annual Meeting, Symposium - Photonics/Smart Pixels.
  53. Shenoy KV, Fonstad Jr. CG, Grot AC, Psaltis D (1993, talk) MBE regrowth of LEDs on VLSI GaAs MESFETs. IEEE/EDS Device Research Conference. pdf
  54. Grot AC, Psaltis D, Shenoy KV, Fonstad Jr. CG (1993, talk) Lowered temperature MBE regrowth of LED structures on high density GaAs circuits fabricated through MOSIS. OSA Topical Meeting.
  55. Shenoy KV, Fonstad Jr. CG, Elman B, Crawford FD, Mikkelson JM (1992, talk) Laser diodes and refractory-metal gate VLSI GaAs MESFETs for smart pixels. IEEE/LEOS Annual Meeting. pdf

Conference Abstracts

  1. Pachitariu M, Ames KC, Yu BM, Santhanam G, Ryu SI, Shenoy KV, Sahani M (2015, talk) Single-trial motor and cortical variability are tightly and bi-directionally coulpled. Frontiers in Neuroscience. Conference Abstract: Computational and Systems Neuroscience (COSYNE), Salt Lake City, UT. In press.
  2. Sarma AA, Bacher D, Blabe C, Homer ML, Jarosiewicz B, Matteson E, Milekovic T, Pandarinath C, Saab J, Simeral JD, Sorice B, Shenoy KV, Henderson JM, Donoghue JP, Hochberg, LR (2014) Advancing stability and performance of point-and-click cursor control by people with tetraplegia using an intracortical brain-computer interface. Program No. 252.01. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience, 2014. Online. pdf [from NPTL]
  3. Blabe CH, Sorice B, Bacher D, Gilja V, Homer ML, Jarosiewicz B, Milekovic T, Nuyujukian P, Pandarinath C, Perge JA, Saab J, Sarma AA, Shenoy KV, Simeral JD, Donoghue JP, Henderson JM, Hochberg, LR (2014) Collaborative, multi-institutional intracortical bci research and the key role of the clinical neurotechnology research assistant. Program No. 252.02. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience, 2014. Online. pdf [from NPTL]
  4. Jarosiewicz B, Bacher D, Sarma AA, Masse NY, Berhanu ED, Sorice B, Oakley EM, Newell K, Blabe CH, Pandarinath C, Shenoy KV, Henderson JM, Simeral JD, Donoghue JP, Hochberg LR (2014) Progress toward a self-calibrating, practical intracortical BCI for people with tetraplegiaProgram No. 252.03. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience, 2014. Online. pdf [from NPTL]
  5. Pandarinath C, Nuyujukian P, Gilja V, Blabe CH, Perge JA, Jarosiewicz B, Hochberg LR, Shenoy KV*, Henderson JM* (2014) Application of a high performance intracortical brain computer interface for communication in a person with amyotrophic lateral sclerosis. Program No. 252.08. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience, 2014. Online. pdf [from NPTL]
  6. Nuyujukian P, Pandiranath C, Gilja V, Blabe C, Perge JA, Jarosiewicz B, Hochberg LR, Shenoy KV*, Henderson JM* (2014) Design of a high performance intracortical brain computer interface for a person with amyotrophic lateral sclerosisProgram No. 252.09. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience, 2014. Online. pdf [from NPTL]
  7. Stavisky SD, Kao JC, Ryu SI, Shenoy KV (2014) Brain-machine interface performance is mediated by an internal model of decoder
    velocity gain. Program No. 252.10. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience, 2014. Online. pdf
  8. Kao JC*, Stavisky SD*, Sussillo D*, Ryu SI, Shenoy KV (2014) A robust and high-performance brain-machine interface using a nonlinear recurrent neural network trained with years of neural data. Program No. 252.11. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience, 2014. Online. pdf
  9. Peixoto D, Kiani R, Chandrasekaran C, Shenoy KV, Newsome WT (2014) Temporal certainty about stimulus presentation differentially affects response dynamics in dorsal premotor and primary motor cortex. Program No. 435.12. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience, 2014. Online. pdf
  10. Chandrasekaran C, Peixoto D, Newsome WT, Shenoy KV (2014) Trial-by-trial covariation between PMd responses and action choice during a reaction time discrimination task. Program No. 435.15. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience, 2014. Online. pdf
  11. O'Shea DJ, Trautmann EM, Shenoy KV (2014) Macaque motor feedback responses rapidly reflect haptically-rendered environmental constraints. Program No. 735.15. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience, 2014. Online. pdf
  12. Kaufman MT, Seely JS, Ryu SI, Shenoy KV, Churchland MM (2014) The neural basis of voluntary movement initiation. Cold Spring Harbor Laboratory symposium: The Leading Strand. Cold Spring Harbor, NY. Page 92. pdf
  13. Nuyujukian P, Gilja V, Kao JC, Fan JM, Stavisky SD, Ryu SI, Shenoy KV (2014) The development of high-performance communication neural prostheses. American Society for Stereotactic and Functional Neurosurgery. Washington, D.C. 92 (suppl 1) 1-75, #129. pdf
  14. Pandarinath C, Gilja V, Blabe C, Jarosiewicz B, Perge JA, Hochberg LR, Shenoy KV, Henderson JM (2014) High-performance communication using neuronal ensemble recordings from the motor cortex of a person with ALS. American Society for Stereotactic and Functional Neurosurgery. Washington, D.C. 92 (suppl 1) 1-75, #130. pdf [from NPTL]
  15. O'Shea DJ, Goo W, Diester I, Kalanithi P, Deisseroth K, Shenoy KV (2014) Optogenetic perturbation and low-dimensional motor cortical activity. Neural Control of Movement. Amsterdam. pdf
  16. Kerr CC, O'Shea DJ, Goo W, Dura-Bernal S, Francis JT, Diester I, Kalanithi P, Deisseroth K, Shenoy KV, Lytton WL (2014) Information flow in optogenetically stimulated macaque motor cortex: simulation and experiment. Neural Control of Movement. Amsterdam. pdf
  17. Gao P, Trautmann E, Yu BM, Santhanam G, Ryu SI, Shenoy KV, Ganguli S (2014, talk) A theory of neural dimensionality and measurement. Frontiers in Neuroscience. Conference Abstract: Computational and Systems Neuroscience (COSYNE), Salt Lake City, UT. T-16. pdf
  18. Seely J, Kaufman MT, Cueva C, Paninski L, Shenoy KV, Churchland MM (2014, talk) State-space models for cortical-muscle transformations. Frontiers in Neuroscience. Conference Abstract: Computational and Systems Neuroscience (COSYNE), Salt Lake City, UT. T-30. pdf
  19. Ames KC, Shenoy KV (2014, poster) Motor cortical activity predicts behavioral corrections following last-minute goal changes. Frontiers in Neuroscience. Conference Abstract: Computational and Systems Neuroscience (COSYNE), Salt Lake City, UT. III-98. pdf
  20. O'Shea D, Goo W, Kalanithi P, Diester I, Deisseroth K, Shenoy KV (2014, poster) Pushing in the wrong direction: optogenetic perturbation misaligns with motor cortical dynamics. Frontiers in Neuroscience. Conference Abstract: Computational and Systems Neuroscience (COSYNE), Salt Lake City, UT. III-100. pdf
  21. Pandarinath C, Gilja V, Blabe C, Hochberg LR, Shenoy KV, Henderson JM (2014, poster) Corresponding neural signatures of movement and imagined movement in human motor cortex. Frontiers in Neuroscience. Conference Abstract: Computational and Systems Neuroscience (COSYNE), Salt Lake City, UT. III-87. pdf [from NPTL]
  22. Simeral JD, Bacher D, Sarma AA, Schmansky NJ, Stavisky SD, Jarosiewicz B, Milekovic T, Rosler DM, Gilja V, Pandarinath C, Cornwell AS, Henderson JM, Shenoy KV, Kirsch RF, Donoghue JP, Hochberg LR (2013) Evolution of the BrainGate real-time Brain-Computer Interface (BCI) platform for individuals with tetraplegia or limb loss. Program No. 80.02. 2013 Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. Online. San Diego, CA. pdf [from NPTL]
  23. Pandarinath C, Gilja V, Blabe CH, Hochberg LR, Shenoy KV, Henderson JM (2013) Overlapping neural representations of upper extremity movements in human primary motor cortex during volitional, imagined, observed, and passive movements. Program No. 80.03. 2013 Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. Online. San Diego, CA. pdf [NPTL pub]
  24. Gilja V, Pandarinath C, Blabe CH, Hochberg LR, Shenoy KV, Henderson JM (2013) Design and application of a high performance intracortical brain computer interface for a person with amyotrophic lateral sclerosis. Program No. 80.06. 2013 Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. Online. San Diego, CA. pdf [from NPTL]
  25. Christie BP, Thompson DE, Irwin Z, Gilja V, Nuyujukian P, Ryu SI, Shenoy KV, Chestek CA (2013) Comparison of spike sorting and thresholding of voltage waveforms for brain machine interfaces. Program No. 80.13. 2013 Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. Online. San Diego, CA. pdf
  26. Chandrasekaran C, Peixoto D, Newsome WT, Shenoy KV (2013) Neural correlates of action choice and RT in dorsal premotor cortex. Program No. 263.10. 2013 Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. Online. San Diego, CA. pdf
  27. Peixoto D, Kiani R, Chandrasekaran C, Shenoy KV, Newsome WT (2013) Neural correlates of decision formation in PMd in a perceptual discrimination task. Program No. 263.13. 2013 Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. Online. San Diego, CA. pdf
  28. Stavisky SD, Kao JC, Nuyujukian P, Ryu SI, Shenoy KV (2013) Motor cortical activity tracks the position of a brain-machine interface cursor. Program No. 567.02. 2013 Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. Online. San Diego, CA. pdf
  29. Kao JC, Nuyujukian P, Cunningham JP, Churchland MM, Ryu SI, Shenoy KV (2013) Increasing brain-machine interface performance by modeling neural population dynamics. Program No. 653.05. 2013 Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. Online. San Diego, CA. pdf
  30. Trautmann E, Gao P, Fan J, Kao JC, Stavisky SD, Nuyujukian P, Yu BM, Santhanam G, Ryu SI, Ganguli S, Shenoy KV (2013) Dimensionality in the motor cortical substrate for reaching. Program No. 750.07. 2013 Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. Online. San Diego, CA. pdf
  31. O'Shea DJ, Goo W, Kalanithi P, Diester I, Ozden I, Wang J, Nurmikko AV, Deisseroth K, Shenoy KV (2013) Dynamics of primate premotor cortical recovery following optogenetic disruption of motor preparation. Program No. 750.13. 2013 Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. Online. San Diego, CA. pdf
  32. Ames KC, Ryu SI, Shenoy KV (2013) Neural and behavioral responses to last-minute goal changes in a reaching task. Program No. 750.21. 2013 Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. Online. San Diego, CA. pdf
  33. Henderson JM, Gilja V, Pandarinath C, Blabe C, Hochberg LR, Shenoy KV (2013) High performance computer cursor control using neuronal ensemble recordings from the motor cortex of a person with ALS. Neurosurgery. 60 Suppl 1:184 pdf [from NPTL]
  34. Sussillo D, Churchland MM, Kaufman MT, Shenoy KV (2013, poster) A recurrent neural network that produces EMG from rhythmic dynamics. Frontiers in Neuroscience. Conference Abstract: Computational and Systems Neuroscience (COSYNE), Salt Lake City, UT. III-67. pdf
  35. O'Shea D, Goo W, Kalanithi P, Diester I, Ramakrishnan C, Deisseroth K, Shenoy KV (2013, poster) Neural dynamics following optogenetic disruption of motor preparation. Frontiers in Neuroscience. Conference Abstract: Computational and Systems Neuroscience (COSYNE), Salt Lake City, UT. III-60. pdf
  36. Gao P, Trautmann E, Yu BM, Santhanam G, Ryu SI, Shenoy KV, Ganguli S (2013, poster) Dimensionality, dynamics, and correlations in the motor cortical substrate for reaching. Frontiers in Neuroscience. Conference Abstract: Computational and Systems Neuroscience (COSYNE), Salt Lake City, UT. III-12. pdf
  37. Elsayed G, Kaufman MT, Ryu SI, Shenoy KV, Churchland MM, Cunningham JP (2013, poster) Characterization of dynamical activity in motor cortex. Frontiers in Neuroscience. Conference Abstract: Computational and Systems Neuroscience (COSYNE), Salt Lake City, UT. III-61. pdf
  38. Seely J, Kaufman MT, Kohn A, Smith M, Movshon A, Priebe N, Lisberger S, Ryu SI, Ryu SI, Shenoy KV, Abbott LF, Cunningham JP, Churchland MM (2013, poster) Quantifying representational and dynamical structure in large neural datasets. Frontiers in Neuroscience. Conference Abstract: Computational and Systems Neuroscience (COSYNE), Salt Lake City, UT. I-62. pdf
  39. Sussillo D, Churchland MM, Kaufman MT, Shenoy KV (2012) A recurrent neural network that produces EMG from thythmic dynamics. Translational and Computational Motor Control (TCMC) pre-meeting to Society for Neuroscience annual meeting, New Orleans, LA. pdf
  40. Bishop W, Chestek CA, Gilja V, Nuyujukian P, Ryu SI, Shenoy KV (2012) Long-term decoding stability without retraining for intracortical brain-computer interfaces. Program No. 583.03. 2012 Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. Online. New Orleans, LA. pdf
  41. Blabe C, Anderson KD, Chestek CA, Gilja V, Sachs AJ, Pandarinath C, Shenoy KV, Henderson JM (2012) Assessing brain-machine interface priorities from the perspective of spinal cord injury participants. Program No. 584.14. 2012 Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. Online. New Orleans, LA. pdf [from NPTL]
  42. Foster JD, Freifeld O, Nuyujukian P, Ryu SI, Black MJ, Shenoy KV (2012) Examining walking and reaching using wirelessly transmitted neural recordings and markerless multi-camera video capture. Program No. 583.04. 2012 Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. Online. New Orleans, LA. pdf
  43. Gilja V, Chestek CA, Blabe CH, Foster BL, Shenoy KV, Parvizi J, Henderson JM (2012) The application of ECoG to the restoration of functional grasp. Program No. 584.13. 2012 Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. Online. New Orleans, LA. pdf [from NPTL]
  44. Goo W, O'Shea D, Kalanithi P, Diester I, Ramakrishnan C, Deisseroth K, Shenoy KV (2012) Disruption of motor preparation by optogenetic stimulation of primate premotor cortex. Program No. 229.06. 2012 Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. Online. New Orleans, LA. pdf
  45. Hussar CR, Kaufman MT, Cunningham JP, Ryu SI, Shenoy KV, Churchland MM (2012) Frequency of multiphasic responses in dorsal premotor and primary motor cortex. Program No. 187.20. 2012 Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. Online. New Orleans, LA. pdf
  46. Kalanithi P, Diester I, O'Shea DJ, Goo W, Wang N, Ramakrishnan C, Deisseroth K, Shenoy KV (2012) Projection targeting and network assays in squirrel monkey optogenetics. Program No. 229.03. 2012 Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. Online. New Orleans, LA. pdf
  47. Kao JC, Nuyujukian P, Stavisky SD, Ryu SI, Shenoy KV (2012) Increasing brain-machine interface robustness using low dimensional projections of neural activity. Program No. 583.02. 2012 Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. Online. New Orleans, LA. pdf
  48. Kaufman MT, Churchland MM, Ryu SI, Shenoy KV (2012) Decision and indecision on single trials of a monkey maze-reaching task. Program No. 730.04. 2012 Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. Online. New Orleans, LA. pdf
  49. Mante V, Sussillo D, Shenoy KV, Newsome WT (2012) Selection and integration of relevant sensory evidence without gating of sensory inputs. Program No. 175.07. 2012 Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. Online. New Orleans, LA. pdf
  50. Nuyujukian P, Kao JC, Ryu SI, Shenoy KV (2012) State decoding using hidden Markov models for continuous brain-machine interfaces. Program No. 583.01. 2012 Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. Online. New Orleans, LA.
  51. O'Shea DJ, Goo W, Kalanithi P, Diester I, Ramakrishnan C, Deisseroth K, Shenoy KV (2012) Optogenetic perturbation of motor preparation in primate dorsal premotor cortex. Program No. 208.05. 2012 Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. Online. New Orleans, LA. pdf
  52. Seely J, Kaufman MT, Kohn A, Smith MA, Movshon J, Priebe NJ, Lisberger SG, Ryu SI, Shenoy KV, Cunningham JP, Churchland MM. (2012) Comparing visual and motor cortex: Representational coding versus dynamical systems. Program No. 300.01. 2012 Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. Online. New Orleans, LA. pdf
  53. Ames KC, Ryu SI, Shenoy KV (2012, talk) Neural dynamics of reaching following incomplete or incorrect planning. Frontiers in Neuroscience. Conference Abstract: Computational and Systems Neuroscience (COSYNE), Salt Lake City, UT. T-5. pdf
  54. Nuyujukian P, Kao J, Fan JM, Stavisky S, Ryu SI, Shenoy KV (2012, poster) A high-performance, robust brain-machine interface without retraining. Frontiers in Neuroscience. Conference Abstract: Computational and Systems Neuroscience (COSYNE), Salt Lake City, UT. III-6 pdf
  55. Seely J, Kaufman MT, Ryu SI, Cunningham JP, Shenoy KV, Churchland MM (2012, poster) Dimensionality in motor cortex: differences between models and experiment. Frontiers in Neuroscience. Conference Abstract: Computational and Systems Neuroscience (COSYNE), Salt Lake City, UT. II-67. pdf
  56. Bishop W, Nuyujukian P, Chestek CA, Gilja V, Ryu SI, Shenoy KV, Yu BM (2012, poster) Long-term decoding stability without retraining for intracortical brain computer Interface. Frontiers in Neuroscience. Conference Abstract: Computational and Systems Neuroscience (COSYNE), Salt Lake City, UT. III-40. pdf
  57. Petreska B, Kaufman MT, Churchland MM, Ryu SI, Shenoy KV, Sahani M (2012, poster) Identifying the neural initiation of a movement. Frontiers in Neuroscience. Conference Abstract: Computational and Systems Neuroscience (COSYNE), Salt Lake City, UT. I-66. pdf
  58. Mante V, Sussillo D, Shenoy KV, Newsome WT (2012, poster) Concurrent integration and gating of sensory information with orthogonal
    mixed representations. Frontiers in Neuroscience. Conference Abstract: Computational and Systems Neuroscience (COSYNE), Salt Lake City, UT. II-58. pdf
  59. Churchland MM, Cunningham JP, Kaufman MT, Foster JD, Nuyujukian P, Ryu SI, Shenoy KV (2011, nanosymposium) Structure of neural population dynamics during reaching. Program No. 123.01. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience, 2011. Online. pdf
  60. Cunningham JP, Churchland MM, Kaufman MT, Shenoy KV (2011, nanosymposium) Extracting rotational structure from motor cortical data. Program No. 123.02. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience, 2011. Online. pdf
  61. aufman MT, Churchland MM, Ryu SI, Shenoy KV (2011, nanosymposium). Changes of mind in a decision-making maze task in monkey. Program No. 123.03. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience, 2011. Online. pdf
  62. Petreska B, Yu BM, Cunningham JP, Santhanam G, Ryu SI, Shenoy KV, Sahani M (2011, nanosymposium). Low-dimensional dynamical segmentation of single-trial array recordings. Program No. 123.04. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience, 2011. Online. pdf
  63. Foster JD, Freifeld O, Nuyujukian P, Ryu SI, Black MJ, Shenoy KV (2011, poster) Towards a freely moving animal model: Combining markerless multi-camera video capture and wirelessly transmitted neural recordings for the analysis of walking. Program No. 142.01. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience, 2011. Online. pdf
  64. Nuyujukian P, Fan JM, Kao JC, Ryu SI, Shenoy KV (2011, poster). Towards robust performance and streamlined training of cortically-controlled brain-machine interfaces. Program No. 142.02. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience, 2011. Online. pdf
  65. Blabe CH, Chestek CA, Gilja V, Foster BL, Shenoy KV, Parvizi J, Henderson JM (2011, poster) An experimental paradigm for neural prosthetics research using human electrocorticographic signals. Program No. 142.16. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience, 2011. Online. pdf [from NPTL]
  66. Chestek CA, Gilja V, Blabe CH, Foster BL, Shenoy KV, Parvizi J, Henderson JM (2011, poster) Grasp classification using high gamma power from human ECoG recordings. Program No. 142.17. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience, 2011. Online. pdf [from NPTL]
  67. Gilja V, Chestek CA, Blabe CH, Foster BL, Shenoy KV, Parvizi J, Henderson JM (2011, poster) Signal selection and conditioning for human ECoG driven brain mahine interfaces. Program No. 142.20. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience, 2011. Online. pdf [NPTL]
  68. Kalanithi P, Diester I, Goo W, O'Shea DJ, Bernstein H, Warden MR, Ramakrishnan C, Deisseroth K, Shenoy KV (2011, poster) Development of a squirrel monkey model for nonhuman primate optogenetics. Program No. 306.06. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience, 2011. Online. pdf
  69. O'Shea DJ, Goo W, Diester I, Kalanithi P, Yizhar O, Ramakrishnan C, Deisseroth K, Shenoy KV (2011, poster) Optogenetic control of excitatory neurons via a red-shifted opsin in primate premotor cortex. Program No. 306.11. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience, 2011. Online. pdf
  70. Diester I, Bernstein H, Mattis J, Zalocusky K, Ramakrishnan C, Bass C, Shenoy KV, Deisseroth K (2011, poster) Optogenetic projection targeting with AAV5 in non-human primates. Program No. 306.13. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience, 2011. Online. pdf
  71. Cowley BR, Kaufman MT, Churchland MM, Ryu SI, Shenoy KV, Yu BM (2011, poster) DataHigh: Graphical user interface for visualizing and interacting with high-dimensional neural trajectories. Program No. 591.16. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience, 2011. Online. pdf
  72. Ames KC, Ryu SI, Shenoy KV (2011, poster) Neural dynamics of movement execution following incomplete or incorrect planning. Program No. 591.17. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience, 2011. Online. pdf
  73. Churchland MM, Cunningham JP, Kaufman MT, Ryu SI, Shenoy KV (2011) Firing rate oscillations underlie motor cortex responses during reaching in monkey. Frontiers in Neuroscience. Conference Abstract: Computational and Systems Neuroscience (COSYNE), Salt Lake City, UT: III-32. pdf
  74. Cunningham JP, Churchland MM, Kaufman MT, Shenoy KV (2011) Extracting rotational structure from motor cortical data. Frontiers in Neuroscience. Conference Abstract: Computational and Systems Neuroscience (COSYNE), Salt Lake City, UT: II-33. pdf
  75. Kaufman MT, Churchland MM, Shenoy KV (2011) Cortical preparatory activity avoids causing movement by remaining in a muscle-neutral space. Frontiers in Neuroscience. Conference Abstract: Computational and Systems Neuroscience (COSYNE), Salt Lake City, UT: II-61. pdf
  76. Petreska B, Cunningham JP, Santhanam G, Yu BM, Ryu SI, Shenoy KV, Sahani M (2011) Detecting changes in neural dynamics within single trials. Frontiers in Neuroscience. Conference Abstract: Computational and Systems Neuroscience (COSYNE), Salt Lake City, UT: I-33. pdf
  77. Lerchner A, Shenoy KV, Sahani M (2011) The role of horizontal long-range connections in shaping the dynamics of multi-electrode array data. Frontiers in Neuroscience. Conference Abstract: Computational and Systems Neuroscience (COSYNE), Salt Lake City, UT: I-27. pdf
  78. Macke J, Busing L, Cunningham JP, Yu BM, Shenoy KV, Sahani M (2011) Modelling low-dimensional dynamics in recorded spiking populations. Frontiers in Neuroscience. Conference Abstract: Computational and Systems Neuroscience (COSYNE), Salt Lake City, UT: I-34. pdf
  79. Rivera-Alvidrez Z, Kalmar R, Ryu SI, Shenoy KV (2010, nanosymposium) Low dimensional neural features predict specific muscle EMG signals. Program No. 732.4. 2010 Neuroscience Meeting Planner. San Diego, CA: Society for Neuroscience. Online. pdf
  80. Kaufman MT, Churchland MM, Shenoy KV (2010, nanosymposium) Lack of evidence for inhibitory gating in monkey M1. Program No. 732.2. 2010 Neuroscience Meeting Planner. San Diego, CA: Society for Neuroscience. Online. pdf
  81. Cunningham JP, Nuyujukian P, Gilja V, Chestek CA, Ryu SI, Shenoy KV (2010, nanosymposium) A closed-loop human simulator for understanding feedback-control and its relevance for brain-machine interfaces. Program No. 20.5. 2010 Neuroscience Meeting Planner. San Diego, CA: Society for Neuroscience. Online. pdf
  82. Gilja V, Nuyujukian P, Chestek CA, Cunningham JP, Fan JM, Yu BM, Ryu SI, Shenoy KV (2010, nanosymposium) A high-performance continuous cortically-controlled prosthesis enabled by feedback control design. Program No. 20.6. 2010 Neuroscience Meeting Planner. San Diego, CA: Society for Neuroscience. Onilne. pdf
  83. Nuyujukian P, Gilja V, Chestek CA, Cunningham JP, Fan JM, Yu BM, Ryu SI, Shenoy KV (2010, nanosymposium) Generalization and robustness of a continuous cortically-controlled prosthesis enabled by feedback control design. Program No. 20.7. 2010 Neuroscience Meeting Planner. San Diego, CA: Society for Neuroscience. Online. pdf
  84. Chestek CA, Gilja V, Nuyujukian P, Foster JD, Kaufman MT, Ryu SI, Shenoy KV (2010) Waveform stability and neural decoder performance across 7 weeks. Program No. 85.1. 2010 Neuroscience Meeting Planner. San Diego, CA: Society for Neuroscience. Online. pdf
  85. Churchland MM, Kaufman MT, Cunningham JP, Ryu SI, Shenoy KV (2010, poster) Some basic features of the neural response in motor and premotor cortex. Program No. 382.2. 2010 Neuroscience Meeting Planner. San Diego, CA: Society for Neuroscience. Online. pdf
  86. Diester I, Goo W, Kaufman MT, Pashaie R, Mogri M, Yizhar O, Ramakrishnan C, Deisseroth K, Shenoy KV (2010, poster) An optogenetic toolbox designed for primates. Program No. 412.9. 2010 Neuroscience Meeting Planner. San Diego, CA: Society for Neuroscience. Online. pdf
  87. Ryu SI, Gilja V, Nuyujukian P, Chestek CA, Yu BM, Shenoy KV (2010, poster) Toward human cortical prostheses: Addressing the performance barrier to clinical reality. Abstract #164. Congress of Neurological Surgeons Annual Meeting Abstracts, San Francisco, CA. 16-21 October. pdf
  88. Chestek CA, Gilja V, Nuyujukian P, Foster JD, Kaufman MT, Ryu SI, Shenoy KV (2010) Waveform stability and neural decoder performance across 7 weeks. Proc. of the Neural Interfaces Conference, Long Beach, CA. 21-23 June. Poster F11, pg 75. pdf
  89. Cunningham JP, Nuyujukian P, Gilja V, Chestek CA, Ryu SI, Shenoy KV (2010) An online, closed-loop testing platform for neural prosthetic systems. Proc. of the Neural Interfaces Conference, Long Beach, CA. 21-23 June. Poster E4, pg 220. pdf
  90. Gilja V, Nuyujukian P, Chestek CA, Cunningham JP, Yu BM, Ryu SI, Shenoy KV (2010) A high-performance cortically-controlled motor prosthesis enabled by a feedback control perspective. Proc. of the Neural Interfaces Conference, Long Beach, CA. 21-23 June. Poster F10, pg 114. pdf
  91. Gilja V*, Nuyujukian P*, Chestek CA, Cunningham JP, Yu BM, Ryu SI, Shenoy KV (2010, poster) High-performance continuous neural cursor control enabled by a feedback control perspective. Frontiers in Neuroscience. Conference Abstract: Computational and Systems Neuroscience (COSYNE), Salt Lake City, UT. doi: 10.3389/conf.fnins.2010.03.00249 pdf
  92. Churchland MM, Kaufman MT, Cunningham JP, Shenoy KV (2010, poster/spotlight) Preparatory tuning in premotor cortex relates most closely to the pop- ulation movement-epoch response. Frontiers in Neuroscience. Conference Abstract: Computational and Systems Neuroscience (COSYNE), Salt Lake City, UT. doi: 10.3389/conf.fnins.2010.03.00253 pdf
  93. Kalmar R, Reppas J, Ryu SI, Shenoy KV, Newsome WT (2010, poster/spotlight) Ensemble activity underlying movement preparation in prearcuate cortex. Frontiers in Neuroscience. Conference Abstract: Computational and Systems Neuroscience (COSYNE), Salt Lake City, UT. doi: 10.3389/conf.fnins.2010.03.00228 pdf
  94. Gilja V, Chestek CA, Cunningham JP, Nuyujukian P, Ryu SI, Shenoy KV (2009, poster) Quantifying and addressing the impact of spike waveform instability on neural prosthetics. Program No. 370.9. 2009 Neuroscience Meeting Planner. Chicago, IL: Society for Neuroscience, 2009. Online. pdf
  95. Rivera Alvidrez Z, Kalmar RS, Ryu SI, Shenoy KV (2009, poster) Evidence of trial-by-trial relationships between EMG and neural population activity in PMd. Program No. 463.4. 2009 Neuroscience Meeting Planner. Chicago, IL: Society for Neuroscience, 2009. Online. pdf
  96. Churchland MM, Kaufman MT, Cunningham JP, Shenoy KV (2009, poster) The tuning of plan activity in premotor / motor cortex is best captured by intrinsic parameters derived from the movement-period population response. Program No. 463.9. 2009 Neuroscience Meeting Planner. Chicago, IL: Society for Neuroscience, 2009. Online. pdf
  97. Kaufman MT, Churchland MM, Shenoy KV (2009, poster) Putative interneurons respond more rapidly than pyramidal cells in monkey premotor cortex. Program No. 463.11. 2009 Neuroscience Meeting Planner. Chicago, IL: Society for Neuroscience, 2009. Online. pdf
  98. Yu BM, Cunningham JP, Santhanam G, Ryu S, Shenoy K, Sahani M (2009, poster). Gaussian-process factor analysis for low-d single-trial analysis of neural population activity. Frontiers in Systems Neuroscience. Conference Abstract: Computational and systems neuroscience. doi: 10.3389/conf.neuro.06.2009.03.153. Computational and systems neuroscience. Salt Lake City, UT, USA, February 26 - March 03, 2009. url pdf
  99. Churchland MM, Yu BM, Cunningham JC, Sugrue L, Cohen M, Corrado G, Newsome W, Clark A, Hosseini P, Scott B, Bradley D, Smith M, Kohn A, Movsh A, Armstrong K, Moore T, Chang S, Snyder LH, Ryu S, Santhanam G, Sahani M, Shenoy KV (2009, poster). Stimulus onset quenches neural variability: a widespread cortical phenomenon. Frontiers in Systems Neuroscience. Conference Abstract: Computational and systems neuroscience. doi: 10.3389/conf.neuro.06.2009.03.295. Computational and systems neuroscience. Salt Lake City, UT, USA, February 26 - March 03, 2009. url pdf
  100. Shenoy KV, Yu BM, Afshar A, Churchland MM, Cunningham JP, Sahani M (2007, talk) Extracting dynamical structure embedded in premotor cortical activity. Neural Coding, Computation and Dynamics (NCCD). Hossegor, France.
  101. Cunningham JP, Yu BM, Sahani M, Shenoy KV (2007, poster) Inferring neural firing rates from spike trains using Gaussian processes. Neural Coding, Computation and Dynamics (NCCD). Hossegor, France.
  102. Gilja V, Santhanam G, Linderman MD, Afshar A, Ryu SI, Meng TH, Sahani M, Shenoy KV (2007, invited talk) Optimizing spike sorting for brain computer interfaces with non-stationary waveforms. Biomedical Engineering Society (BMES) annual meeting.
  103. Gilja V, Santhanam G, Linderman MD, Afshar A, Ryu SI, Meng TH, Sahani M, Shenoy KV (2007) Optimizing spike sorting for brain computer interfaces with non-stationary waveforms. Society for Neuroscience annual meeting. pdf
  104. Churchland MM, Bradley DC, Clark AM, Hosseini P, Cohen MR, Newsome WT, Shenoy KV (2007) The timecourse of neural variability in visual area MT. Society for Neuroscience annual meeting. pdf
  105. Rivera Z, Kalmar R, Afshar A, Santhanam G, Yu BM, Ryu SI, Shenoy KV (2007) Single-trial representation of uncertainty about reach goals in macaque PMd. Society for Neuroscience annual meeting. pdf
  106. Churchland MM, Shenoy KV (2007, talk) Neural correlates of movement preparation. Neural Control of Movement annual meeting 12, “New Perspectives on Motor Preparation” session organized by B. Corneil, Abstract 17.14, Seville, Spain.
  107. Shenoy KV, Churchland MM (2007, talk) Potential role of neural preparatory activity in optimal control theory. Neural Control of Movement annual meeting 12, “New Approaches to Examining Neural Processing in Motor and Premotor Cortex” session organized by K. Shenoy, Abstract 17.13, Seville, Spain.
  108. Santhanam G, Yu BM, Shenoy KV, Sahani M (2006) Factor analysis with Poisson output. Technical Report NPSL-TR-06-1. pdf
  109. Henderson JM, Afshar A, Ryu SI, Hill BC, Bronte-Stewart HM, Shenoy KV (2006, talk) Acute implantation of high density microelectrode arrays for investigation of human cortex. 10th Annual North American Neuromodulation Society Meeting, Las Vegas, Nevada, Dec 9.
  110. Henderson JM, Afshar A, Ryu SI, Hill BC, Bronte-Stewart HM, Shenoy KV (2006, talk) Modulation of neuronal ensemble activity during movement planning in Parkinson's disease patients undergoing deep brain stimulation. 10th International Congress of Parkinson's Disease and Movement Disorders, Kyoto, Japan, Oct 30-Nov 2, 2006. Mov Disord 21 Suppl 15:S348.
  111. Linderman MD, Gilja V, Santhanam G, Afshar A, Ryu SI, Meng TH, Shenoy KV (2006, talk) Neural recording stability of chronic electrode arrays in freely behaving primates. Abstract Viewer / Itinerary Planner. Atlanta, GA: Society for Neuroscience.
  112. Gilja V, Linderman MD, Santhanam G, Afshar A, Ryu SI, Meng TH, Shenoy KV (2006) Multiday electrophysiological recordings from freely behaving primates using an autonomous, multi-channel neural system. Abstract Viewer / Itinerary Planner. Atlanta, GA: Society for Neuroscience.
  113. Churchland MM, Afshar A, Shenoy KV (2006, talk) Movement variability arising from motor preparation. Abstract Viewer / Itinerary Planner. Atlanta, GA: Society for Neuroscience.
  114. Schaffer ES, Rajan K, Churchland MM, Shenoy KV, Abbott LF (2006) Generating complex repeatable patterns of activity by gain modulating network neurons. Abstract Viewer / Itinerary Planner. Atlanta, GA: Society for Neuroscience.
  115. Chestek CA, Batista AP, Yu BM, Santhanam G, Ryu SI, Afshar A, Shenoy KV (2006) The relationship between PMd neural activity and reaching behavior is stable in highly trained macaques. Abstract Viewer / Itinerary Planner. Atlanta, GA: Society for Neuroscience.
  116. Batista AP, Yu BM, Santhanam G, Ryu SI, Afshar A, Shenoy KV (2006) Influence of eye position on end-point decoding accuracy in dorsal premotor cortex. Abstract Viewer / Itinerary Planner. Atlanta, GA: Society for Neuroscience.
  117. Kemere C, Yu BM, Santhanam G, Ryu SI, Afshar A, Meng TH, Shenoy KV (2006) Hidden Markov models for spatial and temporal estimation for prosthetic control. Abstract Viewer / Itinerary Planner. Atlanta, GA: Society for Neuroscience.
  118. Cunningham JP, Yu BM, Shenoy KV (2006) Optimal target placement for neural communication prostheses. Abstract Viewer / Itinerary Planner. Atlanta, GA: Society for Neuroscience.
  119. Churchland MM, Shenoy KV (2006, poster) The activity of motor cortex neurons during reaches is temporally complex and exceedingly heterogeneous. 16th Annual Meeting of the Neural Control of Movement Society, May 2-7 2006, Key Biscane , FL , Abstract F-03. pdf
  120. Batista AP, Santhanam G, Yu BM, Ryu SI, Afshar A, Shenoy KV (2006) Heterogeneous reference frames for reaching in macaque PMd. 16th Annual Meeting of the Neural Control of Movement Society, May 2-7 2006, Key Biscane, FL, Abstract F-12. pdf
  121. Batista AP, Santhanam G, Yu BM, Ryu SI, Afshar A, Shenoy KV (2005, talk) Heterogeneous coordinate frames for reaching in macaque PMd. Program No. 363.12. 2005 Abstract Viewer/Itinerary Planner. Washington, DC: Society for Neuroscience. pdf
  122. Churchland MM, Shenoy KV (2005, talk) Complex patterns of motor cortex activity during reaches at different speeds. Program No. 363.8. 2005 Abstract Viewer/Itinerary Planner. Washington, DC: Society for Neuroscience. pdf
  123. Santhanam G, Ryu SI, Yu BM, Afshar A, Shenoy KV (2005) Intra-cortical communication prosthesis design. Program No. 519.19. 2005 Abstract Viewer/Itinerary Planner. Washington, DC: Society for Neuroscience. pdf
  124. Afshar A, Achtman N, Santhanam G, Ryu SI, Yu BM, Shenoy KV (2005) Free-paced target estimation in a delayed reach task. Program No. 401.13. 2005 Abstract Viewer/Itinerary Planner. Washington, DC: Society for Neuroscience. pdf
  125. Gilja V, Kalmar RS, Santhanam G, Ryu SI, Yu BM, Afshar A, Shenoy KV (2005) Trial-by-trial mean normalization improves plan period reach target decoding. Program No. 519.18. 2005 Abstract Viewer/Itinerary Planner. Washington, DC: Society for Neuroscience. pdf
  126. Kalmar RS, Gilja V, Santhanam G, Ryu SI, Yu BM, Afshar A, Shenoy KV (2005) PMd delay activity during rapid sequential movement plans. Program No. 519.17. 2005 Abstract Viewer/Itinerary Planner. Washington, DC: Society for Neuroscience. pdf
  127. Yu BM, Kemere C, Santhanam G, Afshar A, Ryu SI, Meng TH, Sahani M, Shenoy KV (2005) Mixture of trajectory models for neural decoding of goal-directed movements. Program No. 520.18. 2005 Abstract Viewer/Itinerary Planner. Washington, DC: Society for Neuroscience. pdf
  128. Sahani M, Yu BM, Afshar G, Santhanam G, Ryu SI, Shenoy KV (2005) Extracting dynamical structure embedded in neural activity. Program No. 689.14. 2005 Abstract Viewer/Itinerary Planner. Washington, DC: Society for Neuroscience. pdf
  129. Churchland MM, Yu BM, Ryu SI, Santhanam G, Shenoy KV (2005) Motor preparation and settling activity in PMd. Neural Control of Movement (NCM) Annual Meeting, E-13. pdf
  130. Churchland MM, Yu BM, Ryu SI, Santhanam G, Shenoy KV (2005, talk) Neural variability in premotor cortex provides a signature of motor preparation. Computational and Systems Neuroscience (COSYNE) meeting, Salt Lake City, UT, Contributed Talk #13, 26. pdf
  131. Yu BM, Afshar A, Shenoy KV, Sahani M (2005) Extracting dynamical structure embedded in motor preparatory activity. Computational and Systems Neuroscience (COSYNE) meeting. Salt Lake City, UT , Contributed Poster #290, 303. pdf
  132. fYu BM, Santhanam G, Ryu SI, Shenoy KV (2005) Feedback-directed state transition for recursive Bayesian estimation of goal-directed trajectories. Computational and Systems Neuroscience (COSYNE) meeting. Salt Lake City , UT , Contributed Poster #291, 304. pdf
  133. Churchland MM, Kaufman MT, Shenoy KV (2008, poster) A novel maze task for the study of motor preparation. Program No. 182.14. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. pdf
  134. Kaufman MT, Churchland MM, Shenoy KV (2008, poster) Neurons in monkey premotor cortex change roles across complex movements. Program No. 182.16. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. pdf
  135. Lehocky CA, Santhanam G, Afshar A, Yu BM, Ryu SI, Cunningham JP, Gilja V, Shenoy, KV, Batista AP (2008, poster) Absence of fast-timescale correlations in macaque dorsal premotor cortex. Program No. 262.12. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. pdf
  136. Afshar A, Yu BM, Santhanam G, Ryu SI, Shenoy KV, Sahani M (2008, talk) Evidence for smooth and inertial dynamics in the evolution of neural state. Program No. 319.8. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. pdf
  137. Yu BM, Cunningham JP, Santhanam G, Ryu SI, Shenoy KV, Sahani M (2008, talk) Gaussian process factor analysis for low-dimensional single-trial analysis of neural population activity. Program No. 319.9. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. pdf
  138. Gilja V, Yu BM, Santhanam G, Afshar A, Ryu SI, Shenoy KV (2008, poster) Factor analysis based BCI decoding from spikes and LFP. Program No. 779.2. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. pdf
  139. Chestek CA, Gilja V, Nuyujukian P, Ryu SI, Kier RJ, Harrison RR, Solzbacher F, Shenoy KV (2008, poster) HermesC: wireless low-power neural recording system for freely behaving primates. Program No. 779.11. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. pdf
  140. Harrison RR, Kier RJ, Chestek CA, Gilja V, Nuyujukian P, Ryu SI, Greger B, Solzbacher F, Shenoy KV (2008, poster) Wireless neural signal acquisition with single low-power integrated circuit. Program No. 779.12. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. pdf
  141. Cunningham JP, Yu BM, Gilja V, Ryu SI, Shenoy KV, Sahani M (2008, poster) Towards optimal estimates of neural firing rates from spike trains. Program No. 862.10. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. pdf
  142. Rivera Alvidrez A, Kalmar RS, Yu BM, Ryu SI, Shenoy KV (2008, poster) Neural decoding of goal-directed reaches: scaling up the number of reach goals. Program No. 862.17. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. pdf
  143. Kalmar RS, Reppas JB, Afshar A, Ryu SI, Shenoy KV, Newsome WT (2008, poster) Ensemble activity underlying movement preparation in prearcuate cortex, and a comparison with premotor cortex. Program No. 855.6. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. pdf
  144. Shenoy KV (2008, talk) Dynamical systems perspectives of motor cortical activity. (Symposium: Cortical Networks in Action) Program No. 801.4. Neuroscience Meeting Planner. Washington, DC: Society for Neuroscience. pdf
  145. Gilja V, Chestek CA, Nuyujukian P, Ryu SI, Kier RJ, Solzbacher F, Harrison RR, Shenoy KV (2008, talk) HermesC: RF wireless low-power neural recording system for freely behaving primates. Biomedical Engineering Society (BMES) annual meeting.
  146. Shenoy KV (2008, invited talk) Neural basis of reach preparation. Computational and Systems Neuroscience (COSYNE) meeting, Salt Lake City, UT. pdf
  147. Rivera Alvidrez Z, Kalmar R, Afshar A, Santhanam G, Yu BM, Ryu SI, Shenoy KV (2008, poster) Single-trial representation of uncertainty about reach goals in macaque PMd. Computational and Systems Neuroscience (COSYNE) meeting, Salt Lake City, UT. III-52.
  148. Churchland MM, Yu BM, Ryu SI, Santhanam G, Shenoy KV (2004, invited talk) Settling recurrent networks underlie motor planning in the primate brain. Neural Information Processing Society (NIPS) annual meeting workshop: The neurobiology of planning and deciding: studies from many levels of brain organization.
  149. Kemere C, Santhanam G, Ryu SI, Yu BM, Meng TH, Shenoy KV (2004) Reconstruction of arm trajectories from plan and peri-movement motor cortical activity. Annual Neural Prosthesis Program Meeting, National Institutes of Health. Abstract.
  150. Afshar A, Churchland MM, Shenoy KV (2004) Contribution of motor preparation and execution noise to goal-irrelevant movement variability. Annual Neural Prosthesis Program Meeting, National Institutes of Health. Abstract.
  151. Churchland MM, Yu BM, Ryu SI, Santhanam G, Afshar A, Shenoy KV (2004, talk) Role of movement preparation in movement generation. Advances in Computational Motor Control III, Symposium at the Society for Neuroscience Meeting, R. Shadmehr & E. Todorov , organizers. 2 page paper. pdf
  152. Ryu SI, Santhanam G, Yu BM, Shenoy KV (2004, talk) The speed at which reach movement plans can be decoded from the cortex and its implications for high  performance neural prosthetic arm systems.54th Annual Meeting Congress of Neurological Surgeons (CNS), San Francisco, CA, Article ID: 785, 55(2):481. pdf
  153. Churchland MM, Yu B, Ryu SI, Santhanam G, Shenoy KV (2004, talk) Reaction time and the time-course of cortical pre-motor processing. Soc. for Neurosci. Abstracts: Program #603.5. pdf
  154. Shenoy KV, Churchland MM (2004, talk) Changes in reaction time induced by microstimulation in PMd. Soc. for Neurosci. Abstracts: Program #603.6. pdf
  155. Afshar A, Churchland MM, Shenoy KV (2004) Contribution of motor preparation and execution noise to goal-irrelevant movement variability. Soc. for Neurosci. Abstracts: Program #191.6. pdf
  156. Batista AP, Yu BM, Santhanam G, Ryu SI, Shenoy KV (2004) Coordinate frames for reaching in macaque dorsal premotor cortex (PMd). Soc. for Neurosci. Abstracts: Program #191.7. pdf
  157. Yu BM, Ryu SI, Santhanam G, Churchland MM, Shenoy KV (2004) Improving neural prosthetic system performance by combining plan and peri-movement activity. Soc. for Neurosci. Abstracts: Program #884.11. pdf
  158. Kemere C, Santhanam G, Ryu SI, Yu BM, Meng TH, Shenoy KV (2004) Reconstruction of arm trajectories from plan and peri-movement motor cortical activity. Soc. for Neurosci. Abstracts: Program #884.12. pdf
  159. Ryu SI, Santhanam G, Yu BM, Shenoy KV (2004, talk) High speed neural prosthetic icon positioning. Soc. for Neurosci. Abstracts: Program #263.1. pdf
  160. Santhanam G, Ryu SI, Yu BM, Shenoy KV (2004, talk) High information transmission rates in a neural prosthetic system. Soc. for Neurosci. Abstracts: Program #263.2. pdf
  161. Churchland MM, Shenoy KV (2004) Behavioral variability predicted from recorded plan activity. Neural Control of Movement (NCM) Annual Meeting: 246.122001. pdf
  162. Ryu SI, Yu BM, Churchland MM, Shenoy KV (2004, talk) Premotor cortex plan activity used to decode upcoming reach speed for high-performance neural prosthetic system design. 72nd Annual Meeting American Association of Neurological Surgeons (AANS), Article ID:19873, 1 page, Orlando, FL. pdf
  163. Yu BM, Ryu SI, Churchland MM, Shenoy KV (2004) Improving neural prosthetic system performance for a fixed number of neurons. Computational and Systems Neuroscience (COSYNE), 1st Annual Meeting. Long Island , NY , 219 pdf
  164. Churchland MM, Shenoy KV (2003) Movement speed alters distance tuning of plan activity in monkey pre-motor cortex. Soc. for Neurosci. Abstracts: Program #918.2. pdf
  165. Santhanam G., Churchland MM, Sahani M, Shenoy KV (2003) Local field potential activity varies with reach distance, direction, and speed in monkey pre-motor cortex. Soc. for Neurosci. Abstracts: Program #918.1. pdf
  166. Meeker D, Shenoy KV, Cao S, Pesaran B, Scherberger H, Jarvis M, Buneo CA, Batista AP, Kureshi SA, Mitra PP, Burdick JW, Andersen RA (2001) Cognitive control signals for prosthetic systems. Soc. For Neurosci. Abstracts: 27.
  167. Shenoy KV, Meeker D, Cao S, Kureshi SA, Buneo CA, Batista AP, Burdick JW, Andersen RA (2001, invited talk) Toward prosthetic systems controlled by parietal cortex. Neural Information and Coding Workshop.
  168. Meeker D, Shenoy KV, Kureshi S, Cao S, Burdick J, Pesaran B, Mitra P, Batista A, Buneo C, Gillikin B, Dubowitz D, Andersen RA (2000, invited talk) Toward Adaptive Control of Neural Prosthetics by Parietal Cortex. Neural Information and Coding Workshop.
  169. Shenoy KV, Kureshi SA, Meeker D, Gillikin BL, Dubowitz DJ, Batista AP, Buneo CA, Cao S, Burdick JW, Andersen RA (1999) Toward prosthetic systems controlled by parietal cortex. Soc. For Neurosci. Abstracts: 25.
  170. Shenoy KV, Crowell JA, Andersen RA (1999, invited talk) Influence of pursuit speed on the representation of heading in macaque MSTd. European Conf. on Visual Percep.
  171. Crowell JA, Shenoy KV, Andersen RA (1999, talk) Prior visual motion affects self-motion judgments during eye movements. IOVS/ARVOShenoy KV, Crowell JA, Andersen RA (1998, talk) The influence of pursuit speed upon the representation of heading in Macaque cortical area MSTd. Soc. for Neurosci. Abstracts: 24.
  172. Sugihara H, Murakami I, Komatsu H, Shenoy KV, Andersen RA (1998) Selectivity of neurons to the 3D orientation of a rotating plane in area MSTd of the monkey. Soc. for Neurosci. 24.
  173. Sugihara H, Murakami I, Komatsu H, Shenoy KV, Andersen RA (1998) Neurons in area MSTd of the  monkey have a selectivity to the 3D orientation of a rotating plane. Japan Soc. for Neurosci.
  174. Crowell JA, Maxwell MA, Shenoy KV, Andersen RA (1998, talk) Retinal and extra-retinal motion signals both affect the extent of  gaze-shift compensation. IOVS/ARVO 39.
  175. Shenoy KV, Crowell JA, Bradley DC, Andersen RA (1997, talk) Perception and neural representation of heading during gaze-rotation. Soc. for Neurosci. Abstracts: 23.
  176. Crowell JA, Banks MS, Shenoy KV, Andersen RA (1997, talk) Self-motion path perception during head and body rotations. IOVS/ARVO 38.Shenoy KV, Bradley DC, Andersen RA (1996, talk) Heading computation during head movements in macaque cortical area MSTd. Soc. for Neurosci. Abstracts: 22.
  177. Bradley DC, Maxwell M, Andersen RA, Banks MS, Shenoy KV (1996, talk) Heading computation during pursuit eye movements in cortical area MSTd. Soc. for Neurosci. Abstracts: 22.
  178. Shenoy KV, Kaufman J, McGrann JV, Shaw GL (1989, talk) Selectional learning in the Trion model of cortical organization. Twenty-Second Annual Math. Psych. International Conf.
  179. McGrann JV, Shenoy KV, Shaw GL (1989, talk) Rotational invariance in the Trion model of cortical organization. Twenty-Second Annual Math. Psych. International Conf.

Featured journal paper artwork

IEEE TMBE featured article. url Nuyujukian et al. (2015) IEEE TBME

Kaufman et al. (2014) Nature Neuroscience

Shenoy & Carmena (2014) Neuron

a

Shenoy (2014), Princeton University Press

Gilja V*, Nuyujukian P*, et al. (2012) Nature Neuroscience

Shenoy & Nurmikko (2012) IEEE Pulse Magazine

Afshar et al. (2011) Neuron

Diester et al. (2011) Nature Neuroscience

Chestek*, Gilja*, et al. (2009) IEEE TNSRE

Yu et al. (2007) J Neurophysiology

Churchland et al. (2006) Neuron

Santhanam*, Ryu*, et al. (2006) Nature

Linderman et al. (2006) IEEE Signal Processing Magazine