David Seungwon Paik
Curriculum Vitae
May 2014
 

Contact Information

Lucas MRS Imaging Center, P287
Stanford, California 94305-5488
Phone: (650) 736-4183
Fax:     (650) 723-5795

Web: http://www.stanford.edu/user/david.paik/

 

Education

Ph.D. in Biomedical Informatics, Stanford University, 2002.

M.S. in Electrical Engineering, Stanford University, 1995.

B.S. in Computer Science and in Electrical Engineering, Stanford University, 1995.

 

Positions Held

Assistant Professor of Radiology, Department of Radiology, Stanford University, Stanford, CA, 2006-present.

Postdoctoral Scholar, Radiological Sciences Laboratory and Bio-X, Stanford University, Stanford, CA, 2002-05.

Manager, Stanford Center for Biomedical Computation, Stanford University, Stanford, CA, 2003-04.

Independent Consulting, Palo Alto, CA, 2003-present.

Research Assistant, Radiological Sciences Laboratory, Stanford University, Stanford, CA, 1995-2002.

Research Assistant, Department of Psychiatry, Palo Alto VA Medical Center, Palo Alto, CA, 1994.

Research Assistant, Space, Telecommunications and Radioscience Laboratory, Stanford University, Stanford, CA, 1993.

Research Assistant, Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL, 1991.

Research Assistant, Department of Psychology, Northwestern University, Evanston, IL, 1989-90.

 

Honors and Awards

Second Place in Student Paper Competition for "Mathematical Modeling of the Interactions between Cellular Programs in Response to Oncogene Inactivation." Proceedings of 12th International Conference on Bioinformatics and Bioengineering (BIBE), 2012.

Hounsfield Award for Outstanding Scientific Paper for "Automated Detection of Pulmonary Nodules." Society of Computed Body Tomography and Magnetic Resonance (SCBT-MR) 25th Annual Meeting, 2002.

Best Talk Award for "Computer Aided Detection of Lung Nodules and Colonic Polyps from Volumetric CT Images." Biomedical Computation at Stanford (BCATS), 2001. Awarded Sun Blade 1000 workstation.

Hounsfield Award for Outstanding Scientific Paper for "Computer-Aided Polyp Detection Improves Reading Efficiency in CT Colonography." Society of Computed Body Tomography and Magnetic Resonance (SCBT-MR) 23rd Annual Meeting, 2000.

Cum Laude Award for Outstanding Scientific Paper for "Can Iliac Arterial Tortuosity be Determined from CTA or DSA Images and Is Its Determination Clinically Relevant?" Society of Computed Body Tomography and Magnetic Resonance (SCBT-MR) 23rd Annual Meeting, 2000.

RSNA Research Trainee Prize for "Helical Artifacts in 1-Slice and 4-Slice CT: Quantitative and Qualitative Effects of Scanning Parameters and Object Position on a Simulated Blood Vessel Phantom." Radiological Society of North America (RSNA) 85th Scientific Sessions, 1999.

Best Paper Award for "Visualization and Analysis of 3D Medical Images using the Medial Axis Transform." National Library of Medicine Medical Informatics Training Program Conference, 1998.

Cum Laude Award for Outstanding Scientific Paper for "Creation and Detection of Digital Polyps in Patient CT Data: A Better Gold Standard for Evaluation of Visualization Modes in CT Colonography." Society of Computed Body Tomography and Magnetic Resonance (SCBT-MR) 21st Annual Meeting, 1998.

Hounsfield Award for Outstanding Scientific Paper for "Volumetric Quantification of the Aorta and Its Branches: A Unique Application for CT Angiographic Data." Society of Computed Body Tomography and Magnetic Resonance (SCBT-MR) 21st Annual Meeting, 1998.

National Library of Medicine Pre-Doctoral Fellowship to support Ph.D. training in medical informatics. 1996-2000.

 

Refereed Journal Papers

  1. Habte F, Ren G, Doyle TC, Liu H, Cheng Z, Paik DS, "Impact of a Multiple Mice Holder on Quantitation of High-Throughput microPET Imaging with and without CT Attenuation Correction," Journal of Molecular Imaging and Biology, 2013; 15(5):569-75.
  2. Buckler AJ, Liu TT, Savig E, Suzek BE, Rubin DL, Paik DS, "Quantitative Imaging Biomarker Ontology (QIBO) for Knowledge Representation of Biomedical Imaging Biomarkers," Journal of Digital Imaging, 2013; 26(4):630-41. (see erratum)
  3. Buckler AJ, Paik DS, Ouellette M, Danagoulian J, Wernsing G, Suzek BE, "A Novel Knowledge Representation Framework for the Statistical Validation of Quantitative Imaging Biomarkers," Journal of Digital Imaging, 2013; 26(4):614-29.
  4. Habte F, Budhiraja S, Keren S, Doyle TC, Levin CS, Paik DS, "In situ Study of the Impact of Inter- and Intra-reader Variability on Region of Interest (ROI) Analysis in Preclinical Molecular Imaging," American Journal of Nuclear Medicine and Molecular Imaging, 2013; 3(2):175-181.
  5. Nwabugwu C, Rakhra K, Felsher DW, Paik DS, "In Vivo Imaging-based Mathematical Modeling Techniques that Enhance the Understanding of Oncogene Addiction in Relation to Tumor Growth," Computational and Mathematical Methods in Medicine, 2013; 2013(802512):1-8.
  6. Thomas DG, Gaheen S, Harper SL, Fritts M, Klaessig F, Hahn-Dantona E, Paik DS, Pan S, Stafford G, Freund ET, Klemm J, Baker NA, "ISA-TAB-Nano: A Specification for Sharing Nanomaterial Research Data in Spreadsheet-based Format," BMC Biotechnology, 2013; 13:2.
  7. Kode K, Shachaf C, Elchuri S, Nolan G, Paik DS, "Raman Labeled Nanoparticles: Characterization of Variability and Improved Method for Unmixing," Journal of Raman Spectroscopy, 2012; 43(7):895-905.
  8. {Tran PT, Bendapudi PK, Lin HJ}, Choi P, Koh S, Chen J, Horng G, Hughes NP, Schwartz LH, Miller VA, Kawashima T, Kitamura T, {Paik D, Felsher DW}, "Survival and death signals can predict tumor response to therapy after oncogene inactivation," Science Translational Medicine 2011; 3(103):103ra99.
    { } = co-equal authorship.
  9. Thomas DG, Klaessig F, Harper SL, Fritts M, Hoover MD, Gaheen S, Stokes TH, Reznik-Zellen R, Freund ET, Klemm JD, Paik DS, Baker NA, "Informatics and standards for nanomedicine technology," WIRES Nanomedicine and Nanobiotechnology, 2011; 3(5):511-32.
  10. Pu J, Paik DS, Meng X, Roos JE, Rubin GD, "Shape Break-and-Repair Strategy and Its Application to Automated Medical Image Segmentation," IEEE Transactions on Visualization and Computer Graphics, 2010; 17(1):115-24.
  11. Choudhury KR, Paik DS, Yi CA, Napel S, Roos JE, Rubin GD, "Assessing Operating Characteristics of CAD Algorithms in the Absence of a Gold Standard," Medical Physics, 2010; 37(4):1788-95.
  12. Roos JE, Paik DS, Olsen D, Liu EG, Chow LC, Leung AN, Mindelzun R, Naidich DP, Napel S, Rubin GD, "Computer-aided detection (CAD) of lung nodules on CT: Radiologist performance and reading time with incremental CAD assistance," European Radiology, 2010; 20(3):549-57.
  13. Yaghoubi SS, Jensen MC, Satyamurthy N, Budhiraja S, Paik DS, Czernin J, Gambhir SS, "Noninvasive Detection of Therapeutic Cytolytic T Cells with 18F-FHBG PET in a Patient with Glioma," Nature Clinical Practice Oncology 2009; 6(1):53-8.
  14. Pu J, Roos J, Yi CA, Napel S, Rubin GD, Paik DS, "Adaptive Border Marching Algorithm: Automatic Lung Segmentation on Chest CT Images," Computerized Medical Imaging and Graphics 2008; 32:452-62.
  15. Konukoglu E, Acar B, Paik DS, Beauleu CF, Napel S. "PELS: Polyp Enhancing Level-Set Evolution of the Colon Wall," IEEE Transactions on Medical Imaging 2007; 26(12):1649-56.
  16. Sun S, Rubin GD, Paik DS, Steiner RM, Zhuge F, Napel S. "Registration of Lung Nodules Using a Semi-rigid Model: Method and Preliminary Results," Medical Physics 2007; 34(2):613-26.
  17. Shi R, Schraedley-Desmond P, Napel S, Olcott EW, Jeffrey RB, Yee J, Zalis ME, Margolis D, Paik DS, Sherbondy AJ, Sundaram P, Beaulieu CF. "CT Colonography: Influence of 3D Viewing and Features of Polyp Candidates on Interpretation using Computer Aided Detection." Radiology 2006: 239 768-776.
  18. Pineda AR, Yoon S, Paik DS, Fahrig R. "Optimization of a Tomosynthesis System for the Detection of Lung Nodules." Medical Physics 2006; 33(5): 1372-79.
  19. Rubin GD, Lyo J, Paik DS, Sherbondy A, Chow L, Leung AN, Mindelzun R, Zinck SE, Naidich DP, Napel S. "Pulmonary Nodules in MDCT Scans: Imapct of Computer-Aided Detection." Radiology 2005; 235(1):274-83.
  20. Li P, Napel S, Acar B, Paik DS, Jeffrey RB, Beaulieu CF. "Automatic Registration of Colonic Polyps Between Supine and Prone Scans in CT Colonography." Medical Physics 2004; 31(10):2912-23.
  21. Paik DS, Beaulieu CF, Rubin GD, Acar B, Jeffrey RB, Yee J, Dey J, Napel S. "Surface Normal Overlap: A Computer-Aided Detection Algorithm with Application to Colonic Polyps and Lung Nodules in Helical CT." IEEE Transactions on Medical Imaging 2004; 23(6):661-75.
  22. Mani A, Napel S, Paik DS, Jeffrey RB, Yee J, Olcott EW, Prokesch R, Davila M, Schraedley-Desmond P, Beaulieu CF. "CT Colonography: Feasability of Computer-Aided Polyp Detection in a First Reader Paradigm." Journal of Computer Assisted Tomography 2004; 28(3):318-26.
  23. Sundaram P, Beaulieu CF, Paik DS, Schraedley-Desmond P, Napel S. "CT Colonography: Does improved z resolution help computer-aided polyp detection?" Medical Physics 2003; 30(10):2663-74.
  24. Acar B, Beaulieu CF, Gokturk SB, Tomasi C, Paik DS, Jeffrey RB, Yee J, Napel S. "Edge Displacement Field Based-Classification for Improved Detection of Polyps in CT Colonography." IEEE Transactions on Medical Imaging 2002; 21(12): 1461-67.
  25. Hung PW, Paik DS, Napel S, Yee J, Steinauer-Gebauer A, Jeffrey RB, Min J, Jathavedam A, Beaulieu CF. "Quantification of Distension in CT Colonography: Development and Validation of Three Computer Algorithms." Radiology 2002; 222(2): 543-54.
  26. Napel S, Xu H, Paik DS, Ross BA, Sumanaweera TS, Hossack J, Jeffrey RB. "Carotid Disease: Automated Analysis with Cardiac-gated Three-dimensional US Technique and Preliminary Results." Radiology 2002; 222(2): 560-3.
  27. Gokturk SB, Tomasi C, Acar B, Beaulieu CF, Paik DS, Jeffrey RB, Yee J, Napel S. "A Statistical 3D Pattern Processing Method for Computer Aided Detection of Polyps in CT Colonography." IEEE Transactions on Medical Imaging 2001; 20(12): 1251-60.
  28. Tillich M, Hill BB, Paik DS, Petz K, Napel S, Zarins CK, Rubin GD. "Prediction of Aortoiliac Stent-Graft Length: Comparison of Measurement Methods." Radiology 2001; 220(2): 475-83.
  29. Tillich M, Bell RE, Paik DS, Fleischmann D, Sofilos MC, Logan LJ, Rubin GD. "Iliac Arterial Injuries after Endovascular Repair of Abdominal Aortic Aneurysms: Correlation with Iliac Curvature and Diameter." Radiology 2001; 219(1): 129-36.
  30. Fleischmann D, Hastie TJ, Dannegger FC, Paik DS, Tillich M, Zarins CK, Rubin GD. "Quantitative Determination of Age-related Geometric Changes in the Abdominal Aorta." Journal of Vascular Surgery 2001; 33(1): 97-105.
  31. Fleischmann D, Rubin GD, Paik DS, Yen SY, Hilfiker P, Beaulieu CF, Napel S. "Stair-Step Artifacts with Single versus Multiple Detector-Row Helical CT." Radiology 2000; 216(1): 185-96.
  32. Paik DS, Beaulieu CF, Jeffrey RB, Karadi CA, Napel S. "Visualization Modes for CT Colonography using Cylindrical and Planar Map Projections." Journal of Computer Assisted Tomography 2000; 24(2): 179-88.
  33. Karadi CA, Beaulieu CF, Jeffrey RB, Paik DS, Napel S. "Display Modes for CT Colonography. Part I: Synthesis and Insertion of Polyps into Patient CT Data." Radiology 1999; 212(1):195-201.
  34. Beaulieu CF, Jeffrey RB, Karadi CA, Paik DS, Napel S. "Display Modes for CT Colonography. Part II: Blinded Comparison of Axial CT and Virtual Endoscopic and Panoramic Endoscopic Volume Rendered Studies." Radiology 1999; 212(1): 203-12.
  35. Alley MT, Napel S, Amano Y, Paik DS, Shifrin RY, Shimakawa A, Pelc NJ, Herfkens RJ. "Fast 3D Cardiac Cine MR Imaging." Journal of Magnetic Resonance Imaging 1999; 9(5): 751-755.
  36. Sheikh SF, Paik DS, Beaulieu CF, Rubin GD, Jeffrey RB, Napel S. "Wide-Angle Virtual Endoscopy using Multiple-View Rendering: The Virtual Cockpit." RSNA EJ 1998; 2.
  37. Paik DS, Beaulieu CF, Jeffrey RB, Rubin GD, Napel S. "Automated flight path planning for virtual endoscopy." Medical Physics 1998; 25(5):629-637.
  38. Rubin GD, Paik DS, Johnston PC, Napel S. "Measurement of the aorta and its branches with helical CT." Radiology 1998; 206(3):823-829.
 

Refereed Conference Proceedings Papers

  1. Habte F, Natarajan A, Doyle TC, Paik DS, Gambhir SS. "A simple model for deep tissue attenuation correction and large organ analysis of Cerenkov luminescence imaging," Proceedings of SPIE Medical Imaging 2014, San Diego, CA, February 2014.
  2. Nwabugwu C, Rakhra K, Felsher DW, Paik DS. "A tumor-immune mathematical model of CD4+ T helper cell dependent tumor regression by inactivation oncogene inactivation," 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBS), Osaka, Japan, July 2013.
  3. {Fan-Minogue H, Maslove D, Lamb P}, Levitt J, {Paik DS, Rubin DL}, "Extracting Computational and Semantic Features from Portable Chest X-rays for Diagnosis of Acute Respiratory Distress Syndrome," AMIA Joint Summits on Translational Science, San Francisco, CA, March 2013.
    { } = co-equal authorship.
  4. Nwabugwu C, Rakhra K, Felsher DW, Paik DS. "Mathematical Modeling of the Interactions between Cellular Programs in Response to Oncogene Inactivation." Proceedings of 12th International Conference on Bioinformatics and Bioengineering (BIBE), Larnaca, Cyprus, November 2012.
    Second place winner of Student Paper Competition
    Winner of Stanford University School of Engineering and BioX Travel Awards
  5. Schmitzberger FF, Roos J, Napel S, Rubin G, Paik DS. "Thin Client Architecture in Support of Remote Radiology Learning." Proceedings of the 24th Annual ACM Symposium on Applied Computing, 842-46, Honolulu, HI, 2009.
  6. Sherman MA, JL Middleton, JP Schmidt, DS Paik, SS Blemker, AW Habib, FC Anderson, SL Delp and RB Altman. "The SimTK Framework for physics-based simulation of biological structures: preliminary design." Proceedings of the Workshop on Component Models and Frameworks in High Performance Computing (CompFrame 2005), Atlanta, GA, June 2005.
  7. Acar B, Napel S, Paik DS, Yee J, Gokturk SB, Tomasi C, Beaulieu CF. "Assessment of Optical Flow Field Based Polyp Detectors for CT Colonography." 23rd International Conference on the IEEE Engineering in Medicine and Biology Society, Istanbul, Turkey, October 2001.
  8. Acar B, Napel S, Paik DS, Li P, Yee J, Jeffrey RB, Beaulieu CF. "Medial Axis Registration of Supine and Prone CT Colonography Data." 23rd International Conference on the IEEE Engineering in Medicine and Biology Society, Istanbul, Turkey, October 2001.
  9. Gokturk SB, Tomasi C, Acar B, Paik DS, Beaulieu CF, Napel S. "A New 3D Volume Processing Method for Polyp Detection." 23rd International Conference on the IEEE Engineering in Medicine and Biology Society, Istanbul, Turkey, October 2001.
  10. Acar B, Napel S, Paik DS, Gokturk SB, Tomasi C, Beaulieu CF. "Using Optical Flow Fields for Polyp Detection in Virtual Colonoscopy." 4th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), Utrecht, The Netherlands, October 2001.
  11. Gokturk SB, Tomasi C, Acar B, Paik DS, Beaulieu CF, Napel S. "A Learning Method for Automated Polyp Detection." 4th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), Utrecht, The Netherlands, October 2001.
 

Conference Abstracts

  1. Nwabugwu C, Felsher DW, Paik DS, "Mathematical Modeling of the Sequence of and Interactions Between Cellular Programs in Response to Oncogene Inactivation Measured by Bioluminescence Imaging," The Fifth Annual World Molecular Imaging Congress (WMIC), Dublin, Ireland, September 2012.
  2. Adamick JM, Baker NA, Chappell AR, Fisher JA, Fragoso G, Freund ET, Fritts M, Hahn-Dantona E, Harper SL, Hoover MD, Klaessig F, Klemm JD, Paik DS, Thomas DG, "The National Cancer Institute (NCI) caBIG Nanotechnology Working Group (Nano WG)", Nanoinformatics 2011, Arlington, VA, December 2011.
  3. Liu T, Paik DS, "An informatics approach to characterization of imaging agents and molecular targets" Radiological Society of North America (RSNA) 97th Scientific Sessions, Chicago, IL, November 2011.
  4. Habte F, Ren G, Doyle T, Cheng Z, Gambhir SS, Paik DS, "High-throughput Multiple Mice Imaging on MicroPET and MicroPET-CT Scanners: Evaluation on Image Quantitation Effect," The Fourth Annual World Molecular Imaging Congress (WMIC), San Diego, CA, September 2011.
  5. Liu T, Paik DS, "A systems approach to characterize molecular targets of imaging probes" 19th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Vienna, Austria, July 2011.
  6. Liu T, Savig E, Rubin DL, Paik DS, "The Imaging Biomarker Ontology: Ontology-based Support for Imaging Biomarker Research" Society for Imaging Informatics in Medicine 2011 Annual Meeting, Washington, DC, June 2011.
  7. Roychoudhury K, Napel S, Paik DS, Yi C, Roos JE, Rubin GD, "Assessing the Effect of Morphological Characteristics (MC) on CAD-assisted Detection of Pulmonary Nodules in CT by Probit Regression (PR)" Radiological Society of North America (RSNA) 96th Scientific Sessions, Chicago, IL, November 2010.
  8. Tall M, Napel S, Schmitzberger FF, Roos JE, Paik DS, Rubin GD. "Acquiring and Visualizing Volumetric Eye Gaze Paths through Chest CT Data" Radiological Society of North America (RSNA) 96th Scientific Sessions, Chicago, IL, November 2010.
  9. Rubin GD, Tall M, Roychoudhury K, Roos JE, Paik DS, Napel S. "Perception of Lesions in the Gaze Cone Periphery: Impact of Lesion Size, Distance, and Local Lung Complexity on Detection" Radiological Society of North America (RSNA) 96th Scientific Sessions, Chicago, IL, November 2010.
  10. Klemm J, Baker N, Thomas D, Harper S, Hoover MD, Fritts M, Cachau R, Gaheen S, Pan S, Stafford G, Paik DS, "nano-TAB: A Standard File Format for Data Submission and Exchange on Nanomaterials and Characterizations" Nanoinformatics 2010, Arlington, VA, November 2010.
  11. Baker NA, Cachau R, Collins B, Fragoso G, Freund ET, Fritts M, Gaheen S, Hahn-Dantona E, Harper S, Hoover MD, Klaessig F, Klemm J, Malghan S, Paik DS, Pan S, Reznik-Zellen R, Stafford GA, Stokes T, Thomas D. "Identifying the Common Informatics Needs of Nanomedicine Characterization Methodology" caBIG Annual Meeting 2010, Washington, DC, September 2010.
  12. Kode KK, Shachaf C, Elchuri SV, Nolan G, Paik DS, "Raman Labeled Nanoparticles for in-vivo Imaging: Characterization of Variability and Improved Method for Unmixing" The Third Annual World Molecular Imaging Congress (WMIC), Kyoto, Japan, September 2010.
  13. Habte F, Doyle T, Paik DS, "Reduction of variability in microPET quantitation using ROImax-based statistics" The Third Annual World Molecular Imaging Congress (WMIC), Kyoto, Japan, September 2010.
  14. Rodriguez J, Powell A, Jeffrey S, Batzoglou S, Paik DS, "Automatic detection of metastatic cancer cells in the blood" 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, MA, July 2010.
  15. Schmitzberger FF, Kim T, Roos JE, Napel S, Rubin GD, Paik DS, "Assessing Display Quality for Trials on Lung-nodule CT-Scans Using Existing Non-specialized Monitors" Radiological Society of North America (RSNA) 95th Scientific Sessions, Chicago, IL, November 2009.
  16. Sebekos K, Paik DS, "Modeling Effect of Inhibitory Proteins on Executioner Caspase Activation" Annual Biomedical Research Conference for Minority Students (ABRCMS), Phoenix, AZ, November 2009.
    Winner of ABRCMS Travel Award.
  17. Tall M, Ly DL, Schmitzberger F, Rasooly D, Kim TJ, Roos JE, Paik DS, Napel S, Rubin GD, "Mapping Eye Movements in Three-Dimensions: Analyzing Gaze Paths when Interpreting Volumetric Chest CT Data," Medical Image Perception Society (MIPS) Conference XIII, Santa Barbara, CA, October 2009.
  18. Kode KK, Shachaf C, Elchuri S, Nolan G, Paik DS, "Parametric Modeling of Raman Spectra of Nanoparticles for Quantitative Unmixing" The Second Annual World Molecular Imaging Congress (WMIC), Montreal, Canada, September 2009.
  19. Kode KK, Zavaleta C, Gambhir SS, Paik DS, "Quantitative Unmixing of Spectra for Raman Molecular Imaging of Living Subjects" The Second Annual World Molecular Imaging Congress (WMIC), Montreal, Canada, September 2009.
  20. Yaghoubi S, Jensen M, Satyamurthy N, Habte F, Paik DS, Czernin J, Gambhir SS, "Monitoring Adoptive Cellular Immunotherapy in Glioma Patients Using PET Reporter Gene Imaging." The Second Annual World Molecular Imaging Congress (WMIC), Montreal, Canada, September 2009.
  21. Habte F, Nielsen CH, Ren G, Yaghoubi S, Withofs N, Doyle T, Pisani LJ, Levin CS, Gambhir SS, Paik DS, "Quantitation Error Assessment for Small Animal PET." The Second Annual World Molecular Imaging Congress (WMIC), Montreal, Canada, September 2009.
  22. Habte F, Budhiraja S, Doyle T, Levin CS, Paik DS, "Effect of inter- and intra- user variability in quantification of molecular imaging data." The Second Annual World Molecular Imaging Congress (WMIC), Montreal, Canada, September 2009.
  23. Choudhury KR, Yi CA, Napel S, Paik DS, Roos JE, Rubin GD, "Asessing Operating Characteristics of CAD Algorithms in the Absence of a Gold Standard." Radiological Society of North America (RSNA) 94th Scientific Sessions, Chicago, IL, November 2008.
  24. Paik DS, Guccione S, Baker NA, Pan S, Gaheen S, Molnar L, Kode K, Thomas D, Pappu R, Jones P, Wang M, "An Informatics Perspective on the Experience of Developing and Populating a Database of Cancer-related Nanotechnology." Radiological Society of North America (RSNA) 94th Scientific Sessions, Chicago, IL, November 2008.
  25. Paik DS, Aggarwal A, Olsen DA, Roos JE, Rubin GD, Napel S, "Lung Nodule CAD False Positive Reduction Using a Novel Non-parametric Shape Analysis Approach in Chest CT." Radiological Society of North America (RSNA) 94th Scientific Sessions, Chicago, IL, November 2008.
  26. Schmitzberger FF, Roos JE, Napel S, Rubin GD, Paik DS, "A Thin Client 2D+3D Architecture for Coordinating Multicenter CAD Trials." Radiological Society of North America (RSNA) 94th Scientific Sessions, Chicago, IL, November 2008.
  27. Lin HJ, Tran PT, Bendapudi PK, Chen J, Horng G, Felsher DW, Paik DS, "A Mathematical Model of the Escape Mechanism that Differentiates the Behavior of Oncogene- and Non-Oncogene Addicted Tumor Cells." The First Annual World Molecular Imaging Congress (WMIC), Nice, France, September 2008.
  28. Lin HJ, Tran PT, Bendapudi PK, Chen J, Horng G, Felsher DW, Paik DS, "A Predictive Model of Oncogene-Addiction." The First Annual World Molecular Imaging Congress (WMIC), Nice, France, September 2008.
    Winner of Helena Anna Henzl Gabor Travel Award.
  29. Paik DS, Kode K, Guccione S, Baker NA, Thomas D, Pappu R, Jones P, Wang M, Molnar L, Pan S, Gaheen S, "Experience Developing and Populating a Database of Cancer-related Nanotechnology." caBIG 2008 Annual Meeting, Washington, DC, June 2008.
  30. Yi CA, Olsen DA, Roos JE, Paik DS, Napel S, Rubin GD. "Characteristics of True Positive (TP) Lung Nodules Detected by Computer-aided Detection (CAD) But Subsequently Rejected by Radiologists on Chest MDCT Scans." Radiological Society of North America (RSNA) 93rd Scientific Sessions, Chicago, IL, November 2007.
  31. Olsen DA, Roos JE, Paik DS, Napel S, Rubin GD. "Influence of Lung Nodule Characteristics on Computer-aided Detection (CAD) Based on the Lung Imaging Database Consortium (LIDC) CT Dataset." Radiological Society of North America (RSNA) 93rd Scientific Sessions, Chicago, IL, November 2007.
  32. Paik DS, Olsen DA, Roos JE, Rubin GD. "A Novel Parametric Free-response ROC (FROC) Methodology." Radiological Society of North America (RSNA) 93rd Scientific Sessions, Chicago, IL, November 2007.
  33. Olsen DA, Paik DS, Roos JE, Napel S, Rubin GD. "External Validity of Cross-validation on Computer-aided Detection (CAD) of Lung Nodules Enabled by the LIDC Dataset." Radiological Society of North America (RSNA) 93rd Scientific Sessions, Chicago, IL, November 2007.
  34. Roos JE, Olsen DA, Paik DS, Napel S, Liu EG, Rubin GD. "Potential Equalization of Radiologists' Diagnostic Performance with the Use of Computer-aided Detecton (CAD) as a Second Reader in Lung Nodule Detection on Chest CT." Radiological Society of North America (RSNA) 93rd Scientific Sessions, Chicago, IL, November 2007.
  35. Paik DS, "Role of the Bioinformatics and Biostatistics Resource Core in the Stanford CCNE", presented at NCI Nanotechnology Alliance Investigators Meeting, Chapel Hill, NC, October 2007.
  36. Lin HJ, Tran PT, Budhiraja S, Bendapudi PK, Felsher DW, Paik DS. "Significance of Tumor Types on Quantitative Temporo-Volumetric and Positional Information in Lung Adenocarcinoma in Transgenic Mice." Joint Molecular Imaging Conference, Providence, RI, September 2007.
  37. Xiong G, Budhiraja S, Lin HJ, Bendapudi P, Felsher D, Paik DS. "A Segmentation and Registration Framework for Serial 3D Images of Mice." Joint Molecular Imaging Conference, Providence, RI, September 2007.
  38. Pu J, Rubin GD, Roos JE, Paik DS. "Correcting Under-segmentation of Juxtapleural Lung Nodules in Chest CT." Radiological Society of North America (RSNA) 92nd Scientific Sessions, Chicago, IL, November 2006. Scientific Assembly and Annual Meeting Program 2006:466.
  39. Paik DS, Roos JE, Liu EG, Rubin GD. "Modes of Failure in Radiologist Interpretation of CT Lung Nodule CAD." Radiological Society of North America (RSNA) 92nd Scientific Sessions, Chicago, IL, November 2006. Scientific Assembly and Annual Meeting Program 2006:597.
  40. Roos JE, Paik DS, Liu EG, Rubin GD. "Less is More: Finding the Sweet Spot of How Much CAD Output to Provide to Radiologists." Radiological Society of North America (RSNA) 92nd Scientific Sessions, Chicago, IL, November 2006. Scientific Assembly and Annual Meeting Program 2006:487.
  41. Balci SK, Acar B, Paik DS, Beaulieu CF, Napel S. "Registration of Supine and Prone CT Colonography Data Using Dynamic Time Warping: Method and Evaluation." Radiological Society of North America (RSNA) 91st Scientific Sessions, Chicago, IL, November 2005. Scientific Assembly and Annual Meeting Program 2005:573.
  42. Konukoglu E, Acar B, Paik DS, Beaulieu CF, Napel S. "Polyp Enhancement Scheme for Improved Detection of Colonic Polyps in CT Colonography." Radiological Society of North America (RSNA) 91st Scientific Sessions, Chicago, IL, November 2005. Scientific Assembly and Annual Meeting Program 2005:440.
  43. Shi R, Schraedley-Desmond P, Napel S, Olcott EW, Jeffrey RB, Yee J, Zalis ME, Margolis D, Paik DS, Sherbondy AJ, Sundaram P, Beaulieu CF. "Computer Aided Polyp Detection in CT Colonography: Influence of 3D Viewing and Features of Polyp Candidates on Interpretation." Radiological Society of North America (RSNA) 91st Scientific Sessions, Chicago, IL, November 2005. Scientific Assembly and Annual Meeting Program 2005:336.
  44. Sundaram P, Sifakis E, Paik DS, Beaulieu CF, Napel S. "Fold Removal in CT Colonography (CTC): A Physics-based Approach." Radiological Society of North America (RSNA) 91st Scientific Sessions, Chicago, IL, November 2005. Scientific Assembly and Annual Meeting Program 2005:439.
  45. Konukoglu E, Acar B, Paik DS, Beaulieu CF, Napel S. "Heat Diffusion Based Detection Of Colonic Polyps In Ct Colonography." 13th Annual European Signal Processing Conference (EUSIPCO), Antalya, Turkey, Sept. 4-8, 2005.
  46. Paik DS, Sundaram P, Beaulieu CF, Napel S, "Atomically Selective Morphological Enhancement and Suppression in CT Colonography: Initial Experience with a Lagrangian Approach," Radiological Society of North America (RSNA) 90th Scientific Sessions, Chicago, IL, December 2004. Scientific Assembly and Annual Meeting Program 2004:633.
  47. Sundaram P, Paik DS, Sifakis ED, Beaulieu CF, Napel S, "Removal of Folds in CT Colonography Using Level Sets and Physically Based Simulation: Proof of Concept," Radiological Society of North America (RSNA) 90th Scientific Sessions, Chicago, IL, December 2004. Scientific Assembly and Annual Meeting Program 2004:634.
  48. Paik DS, Sundaram P, Beaulieu CF, Napel S, "Anatomically Selective Morphological Enhancement and Suppression in CT Colonography: Initial Experience," 5th International Symposium on Virtual Colonoscopy, Boston, MA, October 2004.
  49. Sundaram P, Paik DS, Sifakis ED, Beaulieu CF, Napel S, "Selective Fold Removal in CT Colonography Using Physically-based Simulation," 5th International Symposium on Virtual Colonoscopy, Boston, MA, October 2004.
  50. Konukoglu E, Acar B, Paik DS, Beaulieu CF, Napel S, "Computer Aided Detection of Polyps in Virtual Colonoscopy Using 3D Heat Diffusion Fields," 5th International Symposium on Virtual Colonoscopy, Boston, MA, October 2004.
  51. Paik DS, Sherbondy A, Flunker S, Napel S, Rubin GD, Barth RA, "Feasibility of Computer Aided Detection of Metastatic Pulmonary Nodules from Chest CT in Children: Initial Results," Society for Pediatric Radiology (SPR) 47th Annual Meeting, Savannah, GA, April 2004. Pediatric Radiology 34:S78.
  52. Rubin GD, Lyo JP, Paik DS, Sherbondy AK, Naidich DP, Napel S, "Impact of Computer-assisted Detection (CAD) Algorithm vs a Second Radiologist on Reader Sensitivity for Detecting Pulmonary Nodules in MDCT Scan," Radiological Society of North America (RSNA) 89th Scientific Sessions, Chicago, IL, November 2003. Scientific Assembly and Annual Meeting Program 2003:293.
  53. Li P, Napel S, Paik DS, Acar B, Jeffrey RB, Beaulieu CF, "CT Supine and Prone Colon Data Registration: Algorithm Evaluations," Radiological Society of North America (RSNA) 89th Scientific Sessions, Chicago, IL, November 2003. Scientific Assembly and Annual Meeting Program 2003:473-4.
  54. Paik DS, Beaulieu CF, Rubin GD, Acar B, Jeffrey RB, Napel S. "Optimization and Evaluation of a Computer Aided Detection (CAD) Algorithm for Both Colonic Polyps and Lung Nodules in CT." Radiological Society of North America (RSNA) 88th Scientific Sessions, Chicago, IL, December 2002. Radiology 225(P):256.
  55. Mani A, Napel S, Paik DS, Olcott E, Yee J, Beaulieu CF. "CT Colonography: Improved Polyp Detection Sensitivity and Efficiency with Computer Aided Detection (CAD)." Radiological Society of North America (RSNA) 88th Scientific Sessions, Chicago, IL, December 2002. Radiology 225(P):304.
  56. Acar B, Beaulieu CF, Paik DS, Yee J, Jeffrey RB, Napel S. "3D Differential Descriptors For Improved Computer-aided Detection (CAD) of Colonic Polyps in Computed Tomography Colonography (CTC)." Radiological Society of North America (RSNA) 88th Scientific Sessions, Chicago, IL, December 2002. Radiology 225(P):405.
  57. Sundaram P, Beaulieu CF, Paik DS, Schraedley P, Jeffrey RB, Napel S. "CT Colonography: Does Improved Through-plane (z) Resolution Aid Computer-aided Detection (CAD) of Polyps?" Radiological Society of North America (RSNA) 88th Scientific Sessions, Chicago, IL, December 2002. Radiology 225(P):406.
  58. Li P, Napel S, Paik DS, Acar B, Jeffrey RB, Beaulieu CF. "A Statistical Approach for Registration of Polyps Detected in Prone and Supine CT Colonography (CTC)." Radiological Society of North America (RSNA) 88th Scientific Sessions, Chicago, IL, December 2002. Radiology 225(P):406.
  59. Lyo J, Paik DS, Chow L, Leung A, Napel S, Rubin GD. "Double Reading of Chest CT Scans: Comparison of Reader-reader Pairing versus Computer-aided Detection (CAD)-Reader Pairing for the Detection of Lung Nodules." Radiological Society of North America (RSNA) 88th Scientific Sessions, Chicago, IL, December 2002. Radiology 225(P):475.
  60. Lyo J, Paik DS, Zinck S, Naidich D, Napel S, Rubin GD. "Computer-aided Detection (CAD) of Lung Nodules on Thoracic CT Scans: Application to a Population Suspected of Having Nodules on Chest X-Ray (CXR) Interpretation." Radiological Society of North America (RSNA) 88th Scientific Sessions, Chicago, IL, December 2002. Radiology 225(P):477.
  61. Lyo J, Paik DS, Coulam CH, Napel S, Chow L, Leung AN, Mindelzun R, Naidich DP, Rubin GD. "Automated Detection of Pulmonary Nodules." Society of Computed Body Tomography and Magnetic Resonance (SCBT-MR) 25th Annual Meeting, Charleston, SC, March 2002.
    Winner of Hounsfield Award for Outstanding Scientific Paper.
  62. Paik DS, Beaulieu CF, Mani A, Prokesch R, Yee J, Jeffrey RB, Napel S. "Evaluation of Computer Aided Detection in CT Colonography: Potential Applicability to a Screening Population." Radiological Society of North America (RSNA) 87th Scientific Sessions, Chicago, IL, November 2001. Radiology 221(P):332.
  63. Paik DS, Napel S, Coulam CH, Naidich D, Rubin GD. "Computer Aided Detection of Lung Nodules in CT: Preliminary Results." Radiological Society of North America (RSNA) 87th Scientific Sessions, Chicago, IL, November 2001. Radiology 221(P):546.
  64. Gokturk SB, Tomasi C, Acar B, Paik DS, Beaulieu CF, Napel S. "Statistical Approach for Computer Aided Detection (CAD) of Colonic Polyps." Radiological Society of North America (RSNA) 87th Scientific Sessions, Chicago, IL, November 2001. Radiology 221(P):331.
  65. Acar B, Beaulieu CF, Paik DS, Yee J, Tomasi C, Napel S, Gokturk SB, Jeffrey RB. "Computer Aided Detection of Colonic Polyps In CT Colonography Using Optical Flow Fields." Radiological Society of North America (RSNA) 87th Scientific Sessions, Chicago, IL, November 2001. Radiology 221(P):331.
  66. Acar B, Napel S, Paik DS, Li P, Yee J, Beaulieu CF, Jeffrey RB. " Registration of Supine and Prone CT Colonography Data: Method and Evaluation." Radiological Society of North America (RSNA) 87th Scientific Sessions, Chicago, IL, November 2001. Radiology 221(P):332.
  67. Coulam CH, Paik DS, Napel S, Rubin GD. "Evaluation of a Gold Standard for Computer Aided Detection of Lung Nodules." Radiological Society of North America (RSNA) 87th Scientific Sessions, Chicago, IL, November 2001. Radiology 221(P):546.
  68. Raman R, Napel S, Paik DS, Rubin GD. "Quantification of Aortoiliac Irregularity in Patients with Abdominal Aortic Aneurysms: Method and Evaluation." Radiological Society of North America (RSNA) 87th Scientific Sessions, Chicago, IL, November 2001. Radiology 221(P):368.
  69. Yee J, Thornton RH, Kumar NN, Steinauer-Gebauer AM, Hung PW, Paik DS, Beaulieu CF, Napel S. "Automated quantification of distention for CT Colonography." Radiological Society of North America (RSNA) 87th Scientific Sessions, Chicago, IL, November 2001. Radiology 221(P):579.
  70. Paik DS, Beaulieu CF, Yee J, Steinauer-Gebauer AM, Jeffrey RB, Napel S, Betts BJ. "Computer Aided Detection of Polyps in CT Colonography: Free Response ROC Evaluation of Performance." Radiological Society of North America (RSNA) 86th Scientific Sessions, Chicago, IL, November 2000. Radiology 217(P):370.
  71. Zhuge F, Napel S, Paik DS, Rubin GD. "Automatic Detection and Quantification of Abdominal Aortic Thrombus in CT Angiograms Based on Clustering and Global Geometric Information." Radiological Society of North America (RSNA) 86th Scientific Sessions, Chicago, IL, November 2000. Radiology 217(P):208.
  72. Napel S, Xu H, Paik DS, Sumanaweera TS, Hossack J, Jeffrey RB "Computed-aided detection of carotid disease using 3D Ultrasound." Radiological Society of North America (RSNA) 86th Scientific Sessions, Chicago, IL, November 2000. Radiology 217(P):342.
  73. Hung PW, Paik DS, Napel S, Jeffrey RB, Yee J, Beaulieu CF. "Comparison of Computerized Methods for Quantifying Bowel Distension in CT Colonography using Three Different Metrics: Validation in Colon Phantoms." Radiological Society of North America (RSNA) 86th Scientific Sessions, Chicago, IL, November 2000. Radiology 217(P):485.
  74. Yee J, Steinauer-Gebauer AM, Beaulieu CF, Paik DS, Hung PW, Napel S. "Clinical Application of a Computer Automated Distention Quantification Method for CT Colonography." 2nd International Symposium on Virtual Colonoscopy, Boston, MA, October 2000.
  75. Hung P, Paik DS, Napel S, Yee J, Steinauer-Gebauer A, Jeffrey RB, Min J, Jathavedam A, Beaulieu CF. "Comparison of Computerized Methods for Quantifying Bowel Distension in CT Colonography using Three Different Metrics: Validation in Colon Phantoms," 2nd International Symposium on Virtual Colonoscopy, Boston, MA, October 2000.
  76. Xu H, Paik DS, Ross BA, Sumanaweera TS, Hossack J, Jeffrey RB, Napel S. "Automated Quantification of 4D Ultrasound for Carotid Artery Disease." Computer Assisted Radiology and Surgery (CARS) 14th International Congress and Exhibition, San Francisco, CA, June 2000.
  77. Beaulieu CF, Paik DS, Napel S, Yee J, Coulam CH, Steinauer-Gebauer A, Betts BJ, Jeffrey RB. "Computer-Aided Polyp Detection Improves Reading Efficiency in CT Colonography." Society of Computed Body Tomography and Magnetic Resonance (SCBT-MR) 23rd Annual Meeting, San Diego, CA, January 2000.
    Winner of Hounsfield Award for Outstanding Scientific Paper.
  78. Rubin GD, Tillich M, Bell RE, Paik DS, Wolf Y, Hilfiker P, Lee A, Razavi M, Sze D, Zarins CK. "Can Iliac Arterial Tortuosity be Determined from CTA or DSA Images and Is its Determination Clinically Relevant?" Society of Computed Body Tomography and Magnetic Resonance (SCBT-MR) 23rd Annual Meeting, San Diego, CA, January 2000.
    Winner of Cum Laude Award for Outstanding Scientific Paper.
  79. Tillich M, Rubin GD, Petz K, Hill B, Paik DS, Zarins CK. "Prediction of Aortoiliac Stent-Graft Length: Comparison of Measurement Methods." Radiological Society of North America (RSNA) 85th Scientific Sessions, Chicago, IL, November 1999. Radiology 213(P):1617.
  80. Fleischmann D, Rubin GD, Paik DS, Yen SY, Beaulieu CF, Napel S, et al. "Helical Artifacts in 1-Slice and 4-Slice CT: Quantitative and Qualitative Effects of Scanning Parameters and Object Position on a Simulated Blood Vessel Phantom." Radiological Society of North America (RSNA) 85th Scientific Sessions, Chicago, IL, November 1999. Radiology 213(P):319.
    Winner of RSNA Research Trainee Prize.
  81. Ross BA, Paik DS, Sumanaweera TS, Hossack J, Jeffrey RB, Napel S. "Screening for Carotid Artery Stenosis using 3D Ultrasound and Automated 3D Quantification Algorithms." Radiological Society of North America (RSNA) 85th Scientific Sessions, Chicago, IL, November 1999. Radiology 213(P):397.
  82. Paik DS, Beaulieu CF, Jeffrey RB, Karadi CA, Napel S. "Evaluation of Radiologist Performance in Polyp Detection using Map Projection Virtual Colonoscopy." Radiological Society of North America (RSNA) 85th Scientific Sessions, Chicago, IL, November 1999. Radiology 213(P):1050.
  83. Paik DS, Beaulieu CF, Jeffrey RB, Karadi CA, Napel S. "Detection of Polyps in CT Colonography: A Comparison of a Computer Aided Detection Algorithm to 3D Visualization Methods." Radiological Society of North America (RSNA) 85th Scientific Sessions, Chicago, IL, November 1999. Radiology 213(P):197.
  84. Fleischmann D, Paik DS, Napel S, Rubin GD. "Quantitative CT Angiography of the abdominal aorta in healthy adults." European Congress of Radiology (ECR), Vienna, Austria, March 1999. (scientific exhibition)
  85. Napel S, Beaulieu CF, Jeffrey RB, Paik DS, Karadi CA. "New Visualization Modes for Virtual Colonoscopy." 1st International Workshop on Computer-Aided Diagnosis, Chicago, IL, September 1998.
  86. Paik DS, Beaulieu CF, Jeffrey RB, Karadi CA, Napel S. "Panoramic Virtual Colonoscopy using the Mercator Projection." 1st International Symposium on Virtual Colonoscopy, Boston, MA, October 1998.
  87. Karadi CA, Beaulieu CF, Jeffrey RB, Paik DS, Napel S. "Synthesis and Insertion of Colonic Polyps into Helical CT Data of the Colon: Technique and Evaluation." 1st International Symposium on Virtual Colonoscopy, Boston, MA, October 1998.
  88. Beaulieu CF, Jeffrey RB, Karadi CA, Paik DS, Napel S. "Visualization Modes for CT Colonography: Blinded Comparison of Axial CT, Virtual Endoscopy, and Panoramic View Volume Rendering." 1st International Symposium on Virtual Colonoscopy, Boston, MA, October 1998.
  89. Paik DS, Rubin GD, Napel S. "Automatic Segmentation of Aortic Thrombus and Flow Channel in CT Angiography: Method and Evaluation." Radiological Society of North America (RSNA) 84th Scientific Sessions, Chicago, IL, November 1998. Radiology 209(P):1160.
  90. Beaulieu CF, Jeffrey RB, Karadi CA, Paik DS, Napel S. "Visualization Modes for CT Colonography: Blinded Comparison of Axial CT, Virtual Endoscopic and Panoramic View Rendering." Radiological Society of North America (RSNA) 84th Scientific Sessions, Chicago, IL, November 1998. Radiology 209(P):296-97.
  91. Karadi CA, Beaulieu CF, Jeffrey RB, Paik DS, Napel S. "Synthesis and Insertion of Colonic Polyps into Patient CT Data: Technique and Evaluation" Radiological Society of North America (RSNA) 84th Scientific Sessions, Chicago, IL, November 1998. Radiology 209(P):1292.
  92. Rubin GD, Fleischmann D, He HD, Paik DS, Fox SH, Napel S. "Comparison of 4-Detector Row and Standard 1-Detector Row Helical CT Scanners: Helical Artifact and Image Quality." Radiological Society of North America (RSNA) 84th Scientific Sessions, Chicago, IL, November 1998. Radiology 209(P):285.
  93. Paik DS, Rubin GD, Napel S. "Virtual Colonoscopy Visualization Modes using Cylindrical and Planar Map Projections: Technique and Evaluation." Radiological Society of North America (RSNA) 84th Scientific Sessions, Chicago, IL, November 1998. Radiology 209(P):1288.
  94. Buckley JA, Shifrin RY, Paik DS, Rubin GD. "Automated Volumetric Quantification of Blood Vessels Using MR Angiography." Radiological Society of North America (RSNA) 84th Scientific Sessions, Chicago, IL, November 1998. Radiology 209(P):1508.
  95. Choi YH, Rubin GD, Pitlik PT, Paik DS, Napel S, Wexler L. "Virtual Angioscopy of the Aorta: Early Experience with Coarctation and Patent Ductus Arteriosus." Radiological Society of North America (RSNA) 84th Scientific Sessions, Chicago, IL, November 1998. Radiology 209(P):1341.
  96. Beaulieu CF, Karadi CA, Jeffrey RB, Paik DS, Napel S. "Creation and Detection of Digital Polyps in Patient CT Data: A Better Gold Standard for Evaluation of Visualization Modes in CT Colonography." Society of Computed Body Tomography and Magnetic Resonance (SCBT-MR) 21st Annual Meeting, Rancho Mirage, CA, March 1998.
    Winner of Cum Laude Award for Outstanding Scientific Paper.
  97. Rubin GD, Paik DS, Napel S, Jeffrey RB. "Volumetric Quantification of the Aorta and Its Branches: A Unique Application for CT Angiographic Data." Society of Computed Body Tomography and Magnetic Resonance (SCBT-MR) 21st Annual Meeting, Rancho Mirage, CA, March 1998.
    Winner of Hounsfield Award for Outstanding Scientific Paper.
  98. Paik DS, Beaulieu CF, Jeffrey RB, Rubin GD, Napel S. "Limited Visibility Optimization of Volume Rendering for Virtual Endoscopy." Radiological Society of North America (RSNA) 83rd Scientific Sessions, Chicago, IL, November 1997. Radiology 205(P):518.
  99. Beaulieu CF, Jeffrey RB, Paik DS, Slossberg EA, Young HS, Napel S. "Three-dimensional Computed Tomography Colonography: Initial Clinical Experience with 3 mm Collimation and Perspective Volume Rendering." Radiological Society of North America (RSNA) 83rd Scientific Sessions, Chicago, IL, November 1997. Radiology 205(P):196-97.
 

Books, Book Chapters and Theses

  1. Paik DS. "Visualization." In Molecular Imaging: Principles and Practice, Weisledder R, Ross BD, Rehemtulla A, Gambhir SS (eds), BC Decker Inc., 2009.
  2. Beaulieu CF, Paik DS, Napel S, Jeffrey RB. "Advanced 3D Display Methods." In Fundamentals of Virtual Colonoscopy, Dachman AH (ed), Springer-Verlag, NY, 2005.
  3. Beaulieu CF, Paik DS, Napel S, Jeffrey RB. "Advanced 3D Display Methods." In Atlas of Virtual Colonoscopy, Dachman AH (ed), Springer-Verlag, NY, 2003.
  4. Paik DS, "Computer Aided Interpretation of Medical Images." PhD Dissertation, Biomedical Informatics, Stanford University, 2002.
 

Invited Manuscripts

  1. Sundaram P, Paik DS, Beaulieu CF, Napel S. "Algorithmic Colon Polyp Detection: Image Processing or Geometry Processing?" MICCAI 2008 Workshop on Computational and Visualization Challenges in the New Era of Virtual Colonoscopy, September 2008.
  2. Davila ML, Beaulieu CF, Paik DS, Napel S, Edelstein PS, Jeffrey RB. "Computed Tomography and Magnetic Resonance Colonography (Virtual Colonoscopy)" Techniques in Gastrointestinal Endoscopy, January 2000; 2:30-36.
 

Non-peer Reviewed Manuscripts

  1. (in alphabetical order) Baker NA, Fritts M, Guccione S, Paik DS, Pappu RV, Patri A, Rubin D, Shaw SY, Thomas DG, "Nanotechnology Informatics White Paper," white paper commissioned by NCI caBIG, February 2009.
  2. (in alphabetical order) Baker NA, Fritts M, Guccione S, Paik DS, Pappu RV, Rubin D, Shaw SY, Thomas DG, "The need for minimum information standards for development and advancement of nanomaterials as cancer diagnostics and therapeutics," white paper commissioned by NCI caBIG, February 2009.
  3. (in alphabetical order) Baker NA, Fritts M, Guccione S, Paik DS, Pappu RV, Rubin D, Shaw SY, Thomas DG, "Ontologies in cancer nanotechnology research," white paper commissioned by NCI caBIG, January 2009.
  4. Paik DS. "The Actve Transport of Ideas (editorial), "Biomedical Computation Review magazine, Summer 2007.
  5. Paik DS. "A Review of the Review (editorial)," Biomedical Computation Review magazine, Fall 2006.
  6. Paik DS. "Editor's Picks: Chess, Thinking, Seeing, Jaggies and Chess... Again," Biomedical Computation Review magazine, Winter 2005/06.
  7. Paik DS. "Breathing Life Into Paper (editorial)," Biomedical Computation Review magazine, Winter 2005/06.
  8. Paik DS. "Editor's Picks," Biomedical Computation Review magazine, Fall 2005.
  9. Paik DS. "Welcome Back (editorial)," Biomedical Computation Review magazine, Fall 2005.
  10. Paik DS. "Editor's Picks," Biomedical Computation Review magazine, Summer 2005.
  11. Paik DS. "Biomedical Computation Space (editorial)," Biomedical Computation Review magazine, Summer 2005.
 

Invited Presentations

  1. Paik DS, "Analytic Methods for Cancer Nanotechnology." presented at caBIG Tissue Banks and Pathology Tools and Integrated Cancer Research Workspaces Joint Face-to-Face Meeting, Los Angeles, CA, May, 2010.
  2. Paik DS, "Cancer Nanotechnology Database for Nanoparticle Analysis and Design." presented at AMIA Summit on Translational Bioinformatics, San Francisco, CA, March, 2010.
  3. Paik DS, "caBIG ICR Nanotechnology WG: Addressing the Emerging Discipline of Nano-bio-informatics." presented at caBIG 2008 Annual Meeting, Washington, DC, June 2008.
  4. Paik DS, "Toward a Nanobioinformatics Infrastructure for Nanotechnology-based Prostate Cancer Therapeutic Response Tracking", presented at IEEE 7th International Symposium on Bioinformatics and Bioengineering, Boston, MA, October 2007.
  5. Paik DS. "A Biomedical Informatics Perspective on Nanotechnology." presented to trans-NIH Task Force on Nanotechnology, May 2007.
  6. Paik DS. "Display and Navigation Techniques: Stanford University." 2nd International Symposium on Virtual Colonoscopy, Boston, MA, October 2000.
  7. Paik DS. "Visualization and Analysis of 3D Medical Images using the Medial Axis Transform." National Library of Medicine Training Program Conference, Bethesda, MD, June 1998.
    Winner of Best Paper Award.
 

Grants

Principal Investigator, caBIG Integrative Cancer Research (ICR) Nanotechnology Working Group, 2008-09.

Principal Investigator, Cancer Nanotechnology Knowledgebase for Nanoparticle Analysis and Design, 2009-11.

Core Leader, In Vivo Cellular and Molecular Imaging Center@Stanford, NIH/NCI (P50 CA114747), 2005-present.

Core Leader, Multimodality Imaging of GI Cancers for Diagnosis and Directed Therapy, NIH/NCI (U54 CA136465), 2009-present.

Core Leader, Center for Cancer Nanotechnology Excellence focused on Therapeutic Response, NIH/NCI (U54 CA119367), 2006-12.

Co-Investigator, Prediction of Therapeutic Efficacy of Targeted Oncogene Inactivation via PET Imaging using a Novel Smart Apoptosis Probe ([18F]CAIP), Sanofi-funded Bio-X IIP Seed Grant, 2012-present.

Co-Investigator, Mechanisms by which Oncogene Inactivation Elicits Tumor Cell Death, NIH/NCI (R01 CA180387), 2012-present.

Co-Investigator, Improving Radiologist Detection of Lung Nodules with CAD, NIH/NCI (R01 CA109089), 2005-09.

Co-Investigator, Physics-Based Simulation of Biological Structures, NIH/NIGMS (U54 GM072970), 2004-09.

Co-Investigator, Three Dimensional CT Colonography, NIH/NCI (R01 CA72023), 1996-2008.

 

Student and Postdoc Supervision and Committee Membership

Chinyere Nwabugwu, PhD student in Electrical Engineering, 2010-present.
Project: Multiscale Mathematical Model of Oncogene Addiction.

Tiffany Ting Liu, PhD student in Biomedical Informatics, 2009-2012.
Project: Quantitative Imaging Biomarker Ontology (QIBO).

Sarah Aerni, PhD student in Biomedical Informatics, 2009-2012 (PhD Dissertation Committee).
Project: Automated Analysis of Cell Lineage in C. Elegans by Detection of Single-Cell Gene Expression.

Danielle Rasooly, BS student in Math, 2010-present,
Project: Quantitative Model of Contrast Perception in Medical Imaging.

Erica Savig, PhD student in Cancer Biology, 2010-2011,
Project: Curation of Quantitative Imaging Biomarker Ontology (QIBO).

Jesse Rodriguez, PhD student in Biomedical Informatics, 2009-10.
Project: Image Analysis of Circulating Tumor Cells in Breast Cancer.

Kranthi Kode, MS student in Civil and Environmental Engineering, 2008-present.
Project: Biomedical Informatics for Nanotechnology in Cancer Research.

David Yerushalmi, PhD Student in Bioengineering, 2007-10 (PhD Dissertation Committee).
Thesis: 3D Visualiation of PET/CT.

Konstantinos Sebekos, BS student in Biomedical Engineering at Florida International University, 2009 (Summer Research Mentor).
Project: Integration of Model of Caspase Cascade with Tumor Growth Kinetics Model.

Florian Schmitzberger, MS student in Biomedical Informatics, 2007-09.
Project: Image Analysis of Lung Tumors.

Jill Lin, PhD, SMIS Postdoc, Radiology, 2006-09.
Project: 4D CT Quantitation and Kinetics Modeling of Murine Lung Tumors.

Jaime Ramos, PhD student in Bioengineering, 2007-08.
Project: Linking Histology with Molecular Imaging.

Vincent Luaute, Master of Engineering in Electronic Engineering at Dublin City University, 2006-07 (Masters Thesis Committee).
Thesis: Remote Access CT Colonography Training System.

Guanglei Xiong, PhD Student in Biomedical Informatics, 2006-07.
Project: Image Registration in Molecular Imaging.

Shaohua Sun, PhD Student in Electrical Engineering, 2006-07 (PhD Dissertation Committee).
Thesis: Lung Nodule Registration with a Semi-Rigid Model and Learning-Enhanced Simulated Annealing.

Shradha Budhiraja, MS Student in Computer Science, 2006-07.
Project: Molecular Imaging Quantitation and Visualization.

Jiantao Pu, PhD, Postdoc, Radiology, 2005-07.
Project: Image Segmentation for Detection of Lung Nodules in Chest CT.

Arpit Aggarwal, MS Student in Computer Science, 2005-07.
Project: False Positive Reduction for Lung Nodules in Chest CT.

Nandhini Santhanam, MS Student in Electrical Engineering, 2006.
Project: Improvement of Surface Normal Overlap CAD.

 

Teaching and Training Experience

Executive Committee and Academic Advising, Biomedical Informatics Training Program, Stanford University, 2005-present.

Academic Advising, Biomedical Computation Undergraduate Major, Stanford University, 2007-present.

Graduate Admissions Committee Member, Stanford University Medical Information Sciences Training Program, 2000, 2006-present.

Course Co-director, BMI 260/261 Computational Methods for Biomedical Image Analysis and Interpretation, Stanford University. 2011-present.

Lecturer, Biomedical Informatics 205: Biomedical Informatics for Medicine, Stanford University. 2010-present.

Lecturer, Radiology Residents Physics Course, Stanford University. 2006-present.

Lecturer, Nuclear Medicine Residents Physics Course, Stanford University. 2011-present.

Lecturer, Bioengineering 222. Multimodality Molecular Imaging in Living Subjects, Stanford University. 2006-present.

Lecturer, Medical Informatics Short Course, Stanford University. 1997-98, 00-04.

Lecturer, Biomedical Informatics 210B: Introduction to Medical Informatics, Stanford University. 1997-98, 00-02.

Lecturer, Medical Information Sciences 215: Imaging Informatics, Stanford University. 1997-98.

Teaching Assistant, Medical Information Sciences 210: Computer Applications in Medicine, Stanford University, 1997.

Teaching Assistant, Medical Information Sciences 215: Imaging Informatics, Stanford University, 1997.

 

Service and Organizational Experience

Scientific Program Committee, American Medical Informatics Association 2011.

Vice-Chair, ASTM E56.90 Subcommittee on Vocabulary Standards in Nanotechnology, 2009-2013.

Working Group Member, caBIG Integrative Cancer Research (ICR) Nanotechnology Working Group, 2009-present.

Working Group Leader, caBIG Integrative Cancer Research (ICR) Nanotechnology Working Group, 2008-09.

Member, Molecular Imaging Program at Stanford, 2005-present.

Executive Committee, Simbios (NIH National Center for Biomedical Computing), 2004-present.

Founding Executive Editor, Biomedical Computation Review magazine, 2004-present.

Founding Co-Chairman and Programming Committee, Biomedical Computation at Stanford Symposium (BCATS), 2000.

Elected Student Liaison to Faculty, Stanford University Medical Information Sciences Training Program, 1999-2000.

Editor, Biomedical Computation at Stanford Symposium Proceedings, 2000.

Grant Reviewer, Netherlands Organization for Scientific Research, 2007.

Journal Referee, Journal of Nuclear Medicine, 2009-present.

Journal Referee, Molecular Imaging and Biology, 2007-present.

Journal Referee, Academic Radiology, 2004-present.

Journal Referee, IEEE Transactions on Medical Imaging, 2002-present.

Journal Referee, IEEE Transactions on Biomedical Engineering, 2002-present.

Journal Referee, IEEE Computer Graphics and Applications, 1999-present.

Journal Referee, IEEE Transactions on Pattern Analysis and Machine Intelligence, 2007-present.

Journal Referee, Medical Image Analysis, 2007-present.

Journal Referee, Medical Physics, 1999-present.

Journal Referee, Pattern Recognition, 2008-present.

Scientific Meeting Referee, AMIA Annual Symposium, 2003-present.

Scientific Meeting Referee, European Signal Processing Conference (EUSIPCO), 2006-present.

Scientific Meeting Referee, RECOMB, 2009.

 

Patents

  1. Acar B, Beaulieu CF, Paik DS, Konukoglu E, Napel S. "Heat Diffusion Based Detection of Structures of Interest in Medical Images." U.S. Patent 7,729,739.
  2. Paik DS, Sundaram P, Beaulieu CF, Napel S. "Polyp Identification Through Subtraction of Models of Medical Images." U.S. Patent 7,616,800.
  3. Acar B, Beaulieu CF, Gokturk SB, Tomasi C, Paik DS, Jeffrey RB, Napel S. "Method for detecting and classifying a structure of interest in medical images." U.S. Patent 7,272,251.
  4. Acar B, Beaulieu CF, Napel S, Jeffrey, Jr., RB, Paik DS. "Method for Matching and Registering Medical Image Data." U.S. Patent 7,224,827.
  5. Paik DS, Napel S, Rubin GD, Beaulieu CF. "Method for Characterizing Shapes in Medical Images." U.S. Patent 7,043,064.
  6. Hossack JA, Sumanaweera TS, Cai AH, Napel S, Paik DS, Jeffrey RB. "Medical Diagnostic Ultrasound System and Method for Flow Analysis." U.S. Patent 6,503,202.