ABPkgBuilder	ABPkgBuilder
AnnInfo	AnnInfo
baseFile	pubRepo-class
baseFile<-	pubRepo-class
cols2Env	cols2Env
createEmptyDPkg	ABPkgBuilder
downloadData	pubRepo-class
escapeLatexChr	writeManPage
fileMuncher	fileMuncher
fileToXML	fileToXML
findChrLength	writeChrLength
findIDNPath	KEGG-class
findNumCol	getYeastData
findYGChrLength	yeastPkgBuilder
formatABQCList	getDPStats
formatChrLoc	yeastAnn
formatGO	yeastAnn
formatName	writeManPage
GEO	GEO-class
GEO-class	GEO-class
getAllRdaName	writeManPage
getAllSrc	makeSrcInfo
getAllUrl	getSrcUrl
getAncestors	GOXMLParser
getBaseParsers	ABPkgBuilder
getBuild4Yeast	writeManPage
getChildNodes	GOXMLParser
getChroLocation	getChroLocation
getDate	getDPStats
getDirContent	ABPkgBuilder
getDPStats	getDPStats
getDSrc	writeManPage
getDsrc	writeManPage
getEIdNName	KEGGPkgBuilder
getExample	writeManPage
getGEOUrl	getSrcUrl
getGEOYeast	yeastAnn
getGOBuilt	getSrcBuilt
getGOGroupIDs	GOXMLParser
getGOUrl	getSrcUrl
getGPData	getChroLocation
getItem	writeManPage
getKEGGBuilt	getSrcBuilt
getKEGGFile	KEGGPkgBuilder
getKEGGIDNName	getKEGGIDNName
getKEGGOrgName	getKEGGIDNName
getKEGGUrl	getSrcUrl
getLLBuilt	getSrcBuilt
getLLPathMap	getKEGGIDNName
getLLUrl	getSrcUrl
getMultiColNames	ABPkgBuilder
getNoDup	resolveMaps
getOffspringNodes	GOXMLParser
getParentNodes	GOXMLParser
getPBased	getDPStats
getProbe2SGD	yeastAnn
getProbeNum	getDPStats
getSrcBuilt	getSrcBuilt
getSrcBuiltNRef	writeManPage
getSrcNBuilt	writeManPage
getSrcUrl	getSrcUrl
getStrand	GP-class
getTopGOid	GOXMLParser
getTypeColNames	ABPkgBuilder
getUCSCBuilt	getSrcBuilt
getUCSCUrl	getSrcUrl
getUGBuilt	getSrcBuilt
getUGUrl	getSrcUrl
getUniColNames	ABPkgBuilder
getUnified	resolveMaps
getUrlNBuilt	writeManPage
getVote	resolveMaps
getYeastData	getYeastData
getYGBuilt	getSrcBuilt
getYGUrl	getSrcUrl
GO	GO-class
GO-class	GO-class
GOPkgBuilder	GOPkgBuilder
GOXMLParser	GOXMLParser
GP	GP-class
GP-class	GP-class
gpLinkNGene	getChroLocation
hasDelimit	resolveMaps
KEGG	KEGG-class
KEGG-class	KEGG-class
KEGGPkgBuilder	KEGGPkgBuilder
LL	LL-class
LL-class	LL-class
loadFromUrl	loadFromUrl
makeSrcInfo	makeSrcInfo
mapGO2AllProbe	GOXMLParser
mapGO2Category	GOXMLParser
mapll2EC	getKEGGIDNName
mapLL2ECNPName	KEGG-class
matchAll	cols2Env
matchOneRow	cols2Env
matchProbes	getDPStats
mergeRowByKey	fileMuncher
organism	UG-class
organism<-	UG-class
parseData	pubRepo-class
parseEC	getKEGGIDNName
parser	pubRepo-class
parser<-	pubRepo-class
print.ABQCList	print.ABQCList
procYeastGeno	yeastAnn
pubRepo	pubRepo-class
pubRepo-class	pubRepo-class
queryGEO	queryGEO
readBadData	getYeastData
readData	pubRepo-class
readURL	getSrcUrl
resolveMaps	resolveMaps
sourceURLs	sourceURLs
splitEntry	ABPkgBuilder
srcUrl	pubRepo-class
srcUrl<-	pubRepo-class
twoStepSplit	ABPkgBuilder
UG	UG-class
UG-class	UG-class
unifyMappings	unifyMappings
unzipFile	loadFromUrl
validateUrl	loadFromUrl
writeAccessory	writeManPage
writeChrLength	writeChrLength
writeDescription	writeManPage
writeFun	writeManPage
writeMan4Fun	writeManPage
writeMan4QC	writeManPage
writeManPage	writeManPage
writeOrganism	writeChrLength
writeREADME	writeManPage
writeXMLHeader	writeXMLHeader
writeZZZ	writeManPage
yeastAnn	yeastAnn
yeastPkgBuilder	yeastPkgBuilder
YG	YG-class
YG-class	YG-class