Yen-R
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(Created page with "Trying to compile a yen-specific R with Intel MKL. Following https://web.stanford.edu/group/proclus/cgi-bin/mediawiki/index.php/Software-R#admin_-_installing_R.2F3.1.0.mkl as c...")
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(Created page with "Trying to compile a yen-specific R with Intel MKL. Following https://web.stanford.edu/group/proclus/cgi-bin/mediawiki/index.php/Software-R#admin_-_installing_R.2F3.1.0.mkl as c...")
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Revision as of 11:27, 2 November 2015
Trying to compile a yen-specific R with Intel MKL. Following https://web.stanford.edu/group/proclus/cgi-bin/mediawiki/index.php/Software-R#admin_-_installing_R.2F3.1.0.mkl
as chekh on yen4
mkdir /farmshare/software/free/r/yen-r wget https://cran.r-project.org/src/base/R-3/R-3.2.2.tar.gz tar zxvf R-3.2.2.tar.gz cd R-3.2.2/ module load intel/2016 CFLAGS="-O2 -march=native" CXXFLAGS="-O2 -march=native" FFLAGS="-O2 -march=native" FCFLAGS="-O2 -march=native" ./configure --with-blas="-L${MKLROOT}/lib/intel64 -lmkl_gf_lp64 -lmkl_sequential -lmkl_lapack95_lp64 -lmkl_core" --with-lapack --prefix=/farmshare/software/free/r/yen-r/ir --enable-R-shlib
That will use gcc but Intel MKL to compile it.
configure results:
R is now configured for x86_64-pc-linux-gnu Source directory: . Installation directory: /farmshare/software/free/r/yen-r/ir C compiler: gcc -std=gnu99 -O2 -march=native Fortran 77 compiler: gfortran -O2 -march=native C++ compiler: g++ -O2 -march=native C++ 11 compiler: g++ -std=c++11 -O2 -march=native Fortran 90/95 compiler: gfortran -O2 -march=native Obj-C compiler: gcc -g -O2 -fobjc-exceptions Interfaces supported: X11, tcltk External libraries: readline, BLAS(ATLAS), LAPACK(generic), zlib, bzlib, lzma, PCRE, curl Additional capabilities: PNG, JPEG, TIFF, NLS, cairo, ICU Options enabled: shared R library, R profiling Capabilities skipped: Options not enabled: shared BLAS, memory profiling Recommended packages: yes