Stata
From FarmShare
(Difference between revisions)
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</pre> | </pre> | ||
| - | + | ==Interactive Sessions== | |
| - | + | ===Terminal Mode=== | |
To start an interactive session, load one of the modules and run either <code>stata-se</code> (or <code>stata-mp</code>) to start the terminal-mode version of the application: | To start an interactive session, load one of the modules and run either <code>stata-se</code> (or <code>stata-mp</code>) to start the terminal-mode version of the application: | ||
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</pre> | </pre> | ||
| - | + | ===Desktop Mode=== | |
If you connect using X11 for remote display, you can run either or <code>xtata-se</code> (or <code>xstata-mp</code>) to start the desktop (graphical) version of the application: | If you connect using X11 for remote display, you can run either or <code>xtata-se</code> (or <code>xstata-mp</code>) to start the desktop (graphical) version of the application: | ||
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</pre> | </pre> | ||
| - | + | ==Non-interactive jobs== | |
You can also run Stata non-interactively using the <code>do</code> command, producing a <code>.log</code> file containing results: | You can also run Stata non-interactively using the <code>do</code> command, producing a <code>.log</code> file containing results: | ||
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</pre> | </pre> | ||
| + | ===Batch jobs=== | ||
Or, submit a batch job to run on one of the compute nodes: | Or, submit a batch job to run on one of the compute nodes: | ||
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You can also write and submit a traditional Slurm job script. | You can also write and submit a traditional Slurm job script. | ||
| + | |||
| + | <pre> | ||
| + | $ cat test.sh | ||
| + | #!/bin/bash | ||
| + | module load stata-se | ||
| + | stata-se -b do test.do | ||
| + | $ sbatch test.sh | ||
| + | $ ls test.log | ||
| + | test.log | ||
| + | </pre> | ||
Revision as of 13:09, 3 March 2020
Stata/SE and Stata/MP versions 14, 15, and 16 are available on FarmShare:
$ module help statase
% module spider stata
----------------------------------------------------------------------------
stata-mp:
----------------------------------------------------------------------------
Description:
Integrated statistical software package for data analysis, data
management, and graphics.
Versions:
stata-mp/14.2
stata-mp/15
stata-mp/16
...
----------------------------------------------------------------------------
stata-se:
----------------------------------------------------------------------------
Description:
Integrated statistical software package for data analysis, data
management, and graphics.
Versions:
stata-se/14.2
stata-se/15
stata-se/16
...
Contents |
Interactive Sessions
Terminal Mode
To start an interactive session, load one of the modules and run either stata-se (or stata-mp) to start the terminal-mode version of the application:
$ module load stata-se
$ which stata-se
/farmshare/software/non-free/stata-se/16/stata-se
$ stata-se
___ ____ ____ ____ ____ (R)
/__ / ____/ / ____/
___/ / /___/ / /___/ 16.1 Copyright 1985-2019 StataCorp LLC
Statistics/Data Analysis StataCorp
4905 Lakeway Drive
Special Edition College Station, Texas 77845 USA
800-STATA-PC http://www.stata.com
979-696-4600 stata@stata.com
979-696-4601 (fax)
Desktop Mode
If you connect using X11 for remote display, you can run either or xtata-se (or xstata-mp) to start the desktop (graphical) version of the application:
$ ssh -Y sunetid@rice.stanford.edu rice $ module load stata-se rice $ xstata-se &
Non-interactive jobs
You can also run Stata non-interactively using the do command, producing a .log file containing results:
$ module load stata-se $ cat test.do sysuse auto describe $ stata -b do test.do $ cat test.log Contains data from /farmshare/software-prod/non-free/stata-se/16/ado/base/a/aut > o.dta obs: 74 1978 Automobile Data vars: 12 13 Apr 2018 17:45 ...
Batch jobs
Or, submit a batch job to run on one of the compute nodes:
$ module load stata-se $ sbatch --wrap='stata -b do test.do'
You can also write and submit a traditional Slurm job script.
$ cat test.sh #!/bin/bash module load stata-se stata-se -b do test.do $ sbatch test.sh $ ls test.log test.log
