Highlights in 2017 
December Dongjin Kwon, Kilian Pohl: Co-authored article "Enduring Cortical Compromise in Alcoholism: Accelerated by Aging and Compounded by Drug Dependence and Hepatitis C Comorbidity" accepted for publication at JAMA Psychiatry
November Kilian Pohl: Co-authored article "Adolescent Executive Dysfunction in Daily Life: Relationships to Risks, Brain Structure and Substance Use" published at Frontiers in Behavioral Neuroscience
October Dongjin Kwon, Sanghyun Park, Kilian Pohl: Co-authored article "Altered Brain Developmental Trajectories in Adolescents After Initiating Drinking" published at The American Journal of Psychiatry
September Kilian Pohl: Serves on the Biomedical Imaging Technology - A, June, The Surgical Sciences, Biomedical Imaging, and Bioengineering IRG (BMIT-A)
Dongjin Kwon, Kilian Pohl: Co-authored article "The mediating role of cortical thickness and gray matter volume on sleep slow-wave activity during adolescence" published at Brain Structure and Function
August Kilian Pohl: Presenting "Computational Science for Identifying Biomedical Phenotypes" at the 2017 Intelligence in Medicine Summit, Stanford
July Qingyu Zhao: Expert in medical image analysis joins our group
Kilian Pohl: Co-authored article "Active Mean Fields for Probabilistic Image Segmentation: Connections with Chan-Vese and Rudin-Osher-Fatemi Models" published at SIAM Journal on Imaging Sciences
Kilian Pohl: Together with Dr. Pfefferbaum (SRI) receives U24 entitled "NCANDA: Data Analysis Resource" and funded by NIH NIAAA
June Elena Bernardis, Yong Zhang, Kilian Pohl: "eCurves: A Temporal Shape Encoding" is in press at IEEE Transactions on Biomedical Engineering
Kilian Pohl: Serves on the Biomedical Imaging Technology - A, June, The Surgical Sciences, Biomedical Imaging, and Bioengineering IRG (BMIT-A)
Kilian Pohl: Presenting "Public Access to the National Consortium on Alcohol & Neurodevelopment in Adolescence (NCANDA) Data" at the 40th Annual Research Society on Alcoholism Scientific Meeting, Denver, Colorado
May Kilian Pohl: Together with Dr. Valcour (UCSF) received R01 entitled "Machine learning to distinguish HAND from Alzheimer's disease in HIV over age 60" and funded by NIH NIMH
April Ehsanmi Adeli: Expert in medical vision joins our group
March Michael Hasak: Senior software developer joins our group
February Kilian Pohl: Serves on the Analytical Tools and Approaches for (Multidimensional) Scholarly Research Assessment and Decision Support in the Biomedical Enterprise (ZDA1 GXM-A(33)) and the Biodata Management and Analysis Study Section Bioengineering Sciences and Technologies IRG (BDMA)
January Eva Muller-Oehring, Dongjin Kwon, Kilian Pohl: Influences of age, sex, and moderate alcohol drinking on the intrinsic functional architecture of adolescent brains, accepted to Cerebral Cortex
 
 Highlights in 2016 
December Kilian Pohl: Serves as Associate Editor for the journal IEEE Transaction of Medical Imaging
November Kilian Pohl: Serves on The Bioengineering Sciences and Technologies member conflict Special Emphasis Panel (ZRG1 BST-T 03)
October Edith V. Sullivan et al.:Structural brain anomalies in healthy adolescents in the NCANDA cohort: Relation to neuropsychological test performance, sex, and ethnicity, accepted at Brain Imaging and Behavior
September Kilian Pohl:Promoted to Program Director of Biomedical Computing at SRI
August Sara Benito: Full stack engineer joins our group
July Yong Zhang: "Computing Group Cardinality Constraint Solutions for Logistic Regression Problems" in press at Medical Image Analysis with public release of corresponding software
June Kilian M Pohl: Presenting “Classifying MRIs based on Group Cardinality Constrained Solutions” at the Workshop on Medical Computer Vision at the 29th IEEE Conference on Computer Vision and Pattern Recognition (CVPR)
May Yong Zhang & Sanghyun Park: "Joint Data Harmonization and Group Cardinality Constrained Classification" accepted to MICCAI 2016
April Nolan Nichols: Launches SIBIS website
March Sanghyun Park: Expert in medical image analysis joins our group
February Kilian Pohl:Presents "SIBIS: Scalable Informatics for Biomedical Imaging Studies" at the Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Boston
January Edith V. Sullivan, Kilian Pohl:"Harmonizing DTI Measurements across Scanners to Examine the Development of White Matter Microstructure in 803 Adolescents of the NCANDA Study" in press at NeuroImage
 
 Highlights in 2015 
December Dongjin Kwon, Nolan Nichols, Kilian Pohl:Released Scalable Informatics for Biomedical Imaging Studies (SIBIS)
November Kilian Pohl & Adolf Pfefferbaum: Received subcontract from ABCD Data Analysis Center
Nolan Nichols: Wins 'Early Career Investigator Competition' at the BD2K All-Hands Grantee Meeting
October Kilian Pohl: Promoted to Consulting Associate Professor, Department of Psychiatry & Behavioral Sciences, Stanford University
September Nolan Nichols, Kilian Pohl:Received supplement to U01 NCANDA: Data Analysis in support of Big Data to Knowledge (BD2K) initiative and funded by NIH OD, NIAAA, and NABIB
August Dongjin Kwon: 13th most downloaded paper of IEEE Transactions on Medical Image Analysis in July 2015
Nolan Nichols:Received NIH Clinical Loan Repayment Program funded by NIH NIAAA
Nolan Nichols: Presented "The National Consortium on Alcohol and Neurodevelopment in Adolescence (NCANDA): A Framework Supporting Neuroimaging Data Integration and Analysis" at the "Investigator Presentations" Session, Neuroinformatics 2015
July Nolan Nichols: "Neuroinformatics Software Applications Supporting Electronic Data Capture, Management, and Sharing for the Neuroimaging Community", in press at Neuropsychology Review
June Nolan Nichols: Organized the 2015 Hackerthon and the course Brain Hacking 101 and Hackathon Project Outcomes at OHBM
Kilian Pohl: Presented "Age-Related Differences in Adolescent Brain Microstructure: Initial Findings from National Consortium on Alcohol & Neurodevelopment in Adolescence" at the 38th Annual Research Society on Alcoholism Scientific Meeting
May Yong Zhang:Submission Solving Logistic Regression with Group Cardinality Constraints for Time Series Analysis and 3 co-authored papers were accepted to MICCAI 2015
Kilian Pohl:Collaborater in "Geometric Statistics in Computational Anatomy: Non-linear Subspace Learning Beyond the Riemannian Structure" funded by INRIA
April
Dongjin Kwon: joins group to enhance NCANDA with his expertise in medical image analysis
Yong Zhang:"Sparse approximation in medical imaging applications," Ye’s Group Meeting, Department of Management Science and Engineering, Stanford
March
Dimitri Metaxas, Leon Axel, Kilian Pohl: Awarded NIH R01 "Innovative MRI-based Characterization of Cardiac Dyssynchrony"
February
Kilian Pohl: Released sviewer - a simple 3D and 4D MRI viewer.
January
Nolan Nichols: joins group to enhance NCANDA with his expertise in neuroinformatics.
 
 Highlights in 2014 
December  Kilian Pohl: a PI of the U01 National Consortium on Alcohol and Neurodevelopment in Adolescence (NCANDA): Data Analysis.
November  Kilian Pohl: has been cited more than 1000 times.
October  Yong Zhang: joins group to identify phenotypes by creating maps of medical images
September  Kilian Pohl: promoted to Program Director at SRI
August  Kilian Pohl: Presents Logarithm of Odds for Medical Image Analysis at the Joint Statistical Meetings (JSM), Boston
July  Dolf Pfefferbaum: "White Matter Microstructural Recovery with Abstinence and Decline with Relapse in Alcoholism: A Controlled Longitudinal DTI Study," in press at The Lancet Psychiatry
June  Kilian Pohl: Guest lecturer at Biomedical Informatics 260, Stanford University
May  Kilian Pohl: Affiliated with Information Sciences in Imaging at Stanford (ISIS) section, Radiology, Stanford University
April  Kilian Pohl: Received Creative and Novel Ideas in HIV Research (CNIHR) Award
March  Kilian Pohl: "Logarithm of Odds for Medical Images Analysis", Divisions of Biostatistics and Bioinformatics, UCSF
February  Dong Ye: "Auto-Encoding of Discriminating Morphometry from Cardiac MRI", invited for oral presentation to ISBI 2014, Bejing, China.
January  Dong Ye: "Regional Manifold Learning for Disease Classification", in press at IEEE Transactions on Medical Imaging.
 
 Highlights in 2013 
December  Kilian Pohl: Selected to the Program Committee, MICCAI 2014.
November  Dongjin Kwon: "PORTR: Pre-Operative and Post-Recurrence Brain Tumor Registration", in press at IEEE Transactions on Medical Imaging.
October  Kilian Pohl: Consulting Assistant Professor, Department of Psychiatry & Behavioral Sciences, Stanford University
September  Kilian Pohl: Oral Session Chair: "Registration and Atlas Construction", MICCAI 2013
August  Dong Ye: Completed his PhD in Bioengineering, UPenn
July  Kilian Pohl: Co-Chair of IPMI 2013, Asilomar, CA
June  Kilian Pohl: Joined SRI International
May  Dong Ye:"FLOOR: Fusing Locally Optimal Registrations", accepted to MICCAI 2013.
Mustafa Uzunbas:"Collaborative Multi Organ Segmentation by Integrating Deformable and Graphical Models", accepted to MICCAI 2013.
April  Kilian Pohl: "A Bayesian model for joint segmentation and registration”, cited more than 150 times according to Google Scholar.
March  Kilian Pohl: "Automatic Identification of Imaging Phenotypes”, Department of Computer Science, IBM Research Almaden.
February  Birkan Tunc: "Multinomial Probabilistic Fiber Representation for Connectivity Driven Clustering", accepted to IPMI 2013.
Elena Bernardis: "Extracting Evolving Pathologies via Spectral Clustering," accepted to IPMI 2013.
January  Ender Konukoglu: "WESD - Weighted Spectral Distance for Measuring Shape Dissimilarity", in press at IEEE Transactions on Pattern Analysis and Machine Intelligence
Ender Konukoglu, Ali Gooya: 5th and 9th most accessed papers of IEEE Transactions on Medical Image Analysis in December 2012
 
 Highlights in 2012 
December  Kilian Pohl: Co-Chairs IPMI 2013 - Paper Submission Deadline: Dec 21st
November  EMSegmenter, Change Tracker, Scene View, and Annotation demoed at RSNA
October  Andreas Schuh: New software releases of GONDOLA and MICO
Elena Bernardis: "Structural-Flow Trajectories for Unravelling 3D Tubular Bundles," last author of oral presentation at MICCAI 2012.
September  Kilian Pohl: "Image-Based Quantification of Pathologies", Department of Radiology and Biomedical Imaging, UCSF
August  Ender Konukoglu : "Discriminative Segmentation-based Evaluation through Shape Dissimilarity", in press at IEEE TMI
Yangming Ou, Andreas Schuh: Software releases of the deformable registration package DRAMMS
July  Ali Gooya: "GLISTR: Glioma Image Segmentation and Registration", in press at IEEE TMI
Birkan Tunc: joins team to work on temporal consistent analysis of longitudinal DTI
June  Andreas Schuh: New software releases of BASIS 1.3, and GLISTR 2.2.1
May  Dong Ye: "Regional Manifold Learning for Deformable Registration of Brain MR Images" Joint Segmen," accepted to MICCAI 2012
Elena Bernardis: "Temporal Shape Analysis via the Spectral Signature," accepted to MICCAI 2012.
April  Kilian Pohl: "Implicit Shape Representations for Medical Images", Center for Imaging Science, John Hopkins University
March  Andreas Schuh: New software releases of BASIS 1.2, GLISTR 2.1, ODVBA 2.0, WMLS 2.0
Yangming Ou: "Validation of DRAMMS among 12 Popular Methods in Cross-Subject Cardiac MRI Registration", Oral, WBIR 2012
February  Received funding from Institute for Translational Medicine and Therapeutics (ITMAT) for Automatic 4D Analysis of Cardiac MR Scans
January
Dong Ye, Dongjin Kwon, Jayender Jagadeesan, Jutta Eckl, Mustafa Uzunbas: Congratulations to your papers being accepted to ISBI 2012.
 
 Highlights in 2011 
December  Elena Bernadis: joins team to work on analysis of lesion from 4D medical scans.
November  EMSegmenter, Change Tracker, and Annotation demoed at RSNA
Kilian Pohl: Program Committee Member and Co-Chair of Workshops, Tutorials & Challenges at MICCAI 2012
October  Dongjin Kwon: joins team to work on registration of longitudinal scans of brain tumor patients
September  Ali Gooya: "Joint Segmentation and Deformable Registration of Brain Scans Guided by a Tumor Growth Model", Poster, MICCAI 2011
Bilwaj Gaonkar: "Pattern Based Morphometry", Poster, MICCAI 2011
Kilian Pohl: "Medical Image Based Biomarkers for Disease Detection", Invited Speaker, Janelia Conference: BioImage Informatics II
August  Daniel Haehn: Release of EMSegmenter in Slicer 4
Ali Gooya & Andreas Schuh: Release of GLISTR
July  Kilian Pohl: Organizing Committee Member of IPMI 2013
Kilian Pohl: "A Bayesian model for joint segmentation and registration" is cited over 100 times
June  Kilian Pohl: "Identifying Pathologies from Medical Images", Golby Lab, Brigham and Women's Hospital, Harvard Medical School
May  Dong Hye: "Morphological Classification: Application to cardiac MRI of Tetralogy of Fallot", Oral presentation, FIMH 2011
Dong Hye: "Prediction of MCI to AD conversion via structural MRI using manifold learning and semi-supervised pattern classification", Oral presentation, PRNI 2011
April  Kayhan Batmanghelich: "Disease Classification And Predication via Semi-Supervised Dimensionality Reduction" receives Top 10 Paper Award of ISBI 2011
Bilwaj Gaonkar: "Automated Segmentation of Cortical Necrosis Using a Wavelet Based Abnormality Detection System", Poster, ISBI 2011
Daniel Haehn: Release of New Module for Atlas Creation in Slicer 3
March  Dominique Belchami: Release of EMSegmenter in Slicer 3.6.3
Kilian Pohl: "A New Metric for Detecting Change in Slowly Evolving Brain Tumors: Validation in Meningioma Patients", Neurosurgery
February  Daniel Haehn: Release of Annotation Tool in Slicer 4
January  Dominique Belchami: Call for Automatic Segmentation Tasks
Andrey Fedorov: "Atlas-guided Segmentation of Vervet Monkey Brain MRI, Special Issue on Neuroimaging of non-human Primates", Accepted to Open Neuroimage Journal