- PRISM Output File: PRISM Search with 28 HXT2-like ORFs
-
- >YAR020C
- >YBR232C
- >YDL047W
- >YDL171C
- >YDR345C
- >YER056C-A
- >YER102W
- >YER131W
- >YFL068W
- >YGL189C
- >YGR034W
- >YHL033C
- >YIL018W
- >YIL052C
- >YIL148W
- >YKL199C
- >YKR083C
- >YLR048W
- >YLR150W
- >YLR280C
- >YLR339C
- >YML101C
- >YMR011W
- >YOR293W
- >YPL090C
- >YPL131W
- >YPL198W
- >YPL220W
- PRISM results for larsms@leland.stanford.edu
-
- Summary:
-
-
Information content
- Motif 1 -- GTCT[CT][CT]TCCT[CT]C[CT]
( 7.6 + 128.0 = 135.6)
- Motif 2 -- TCATCG
( 7.0 + 29.6 = 36.6)
- Variants:
- Motif 3 -- TCATCG
( 8.7 + 5.6 = 14.3)
-
- Motif 1 -- GTCT[CT][CT]TCCT[CT]C[CT]
- Seed: TCCT Obs: 28 Exp: 22.84 p-value: 0.000526
- Iterations: 13
- Information: 7.55 + 128.04 = 135.59
-
-
- Pos p-value log(p)
- -7 0.25 1.39
- -6 0.00141 6.56
- -5 0.0029 5.84
- -4 1.53e-07 15.69
- -3 2.01e-12 26.93
- -2 1.11e-07 16.01
- -1 7.9e-14 30.17
-
- 4 0.00234 6.06
- 5 1.38e-06 13.49
- 6 0.000695 7.27
- 7 0.522 0.65
-
- Scoring matrix:
- G T C T [CT] [CT] T C C T [CT]
C [CT]
- -1.0 -0.5 -0.9 -1.5 -1.2 -4.1 -4.6 -4.6 -4.6 -4.6 -0.5
-1.0 -0.9
- 0.1 0.3 0.8 0.0 0.7 0.5 -4.1 1.6 1.6 -4.1 0.5
0.7 0.5
- 0.5 -0.6 -0.2 -1.3 -0.8 -1.3 -4.1 -4.1 -4.1 -4.1 -0.6
-0.4 -0.2
- 0.2 0.4 -0.1 0.8 0.3 0.7 1.2 -4.6 -4.6 1.2 0.3
0.1 0.3
-
- Hits with positive score
- Locus Score Weight Pos. Segment and annotation
- ----------------------------------------------------------------
- YLR150W 5.106 2.007 -517 GTCTCCTCCTCCT STM1
unknown
- YAR020C 4.666 2.000 -63 TTCTTTTCCTTCC similar
to Pau3p/Ycr104p, PAU1 family
- YMR011W 4.625 1.999 -542 TTCTTCTCCTCCC HXT2
hexose permease
- YML101C 4.263 1.991 -360 CCCTTCTCCTTCC unknown
- YLR150W 3.965 1.981 -177 TCTTCTTCCTTCC STM1
unknown
- YDL047W 3.444 1.956 -109 TTCTCTTCCTATT SIT4
protein phosphatase
- YDL047W 3.403 1.954 -88 GTCCCCTCCTCGC SIT4
protein phosphatase
- YIL052C 3.344 1.950 -248 TCCTCTTCCTGTC RPL34B
ribosomal protein L34B
- YLR280C 3.316 1.948 -564 TCGTTTTCCTTCT unknown
- YIL052C 3.287 1.946 -446 GTGTTTTCCTTTC RPL34B
ribosomal protein L34B
- YLR150W 3.122 1.934 -514 TCCTCCTCCTCAC STM1
unknown
- YML101C 3.047 1.927 -310 GCCCCTTCCTATC unknown
- YLR280C 2.677 1.889 -549 GGCTTCTCCTGCT unknown
- YLR150W 2.619 1.882 -173 CTTCCTTCCTTCG STM1
unknown
- YLR280C 2.520 1.868 -574 GTGCTTTCCTTCG unknown
- YIL052C 2.352 1.843 -254 AACTCTTCCTCTT RPL34B
ribosomal protein L34B
- YKL199C 2.334 1.840 -604 NNNNTTTCCTTCT YKT9
unknown
- YMR011W 2.190 1.816 -386 CCTTTTTCCTACG HXT2
hexose permease
- YLR280C 2.165 1.811 -540 TGCTTCTCCTTGT unknown
- YAR020C 2.158 1.810 -437 TTTCCCTCCTACT similar
to Pau3p/Ycr104p, PAU1 family
- YIL018W 2.025 1.783 -520 CTCTTCTCCTTAG RPL2B
ribosomal protein L2B
- YMR011W 1.981 1.774 -479 TTTTTCTCCTCAC HXT2
hexose permease
- YLR150W 1.963 1.770 -222 GTATTTTCCTTGT STM1
unknown
- YER056C-A 1.895 1.755 -133 GACGCTTCCTCCG RPL34A
ribosomal protein L34A
- YPL131W 1.699 1.707 -51 GTTTTCTCCTACA RPL5
ribosomal protein L5
- YPL198W 1.632 1.688 -411 ACCTGTTCCTTTC RPL7B
ribosomal protein L7B
- YIL148W 1.621 1.685 -240 GCATATTCCTCCT RPL40A
ribosomal protein L40A
- YPL198W 1.318 1.593 -91 AGCTCTTCCTATT RPL7B
ribosomal protein L7B
- YPL198W 1.187 1.547 -330 TCGTTTTCCTCGA RPL7B
ribosomal protein L7B
- YLR280C 1.098 1.514 -306 CATTCTTCCTTTA unknown
- YDL171C 1.045 1.494 -345 TGGTCTTCCTTAT GLT1
glutamate synthase (NAPDPH) (GOGAT)
- YHL033C 0.956 1.458 -312 TTATATTCCTCTC RPL8A
ribosomal protein L8A
- YIL148W 0.937 1.450 -237 TATTCCTCCTATG RPL40A
ribosomal protein L40A
- YAR020C 0.776 1.382 -321 CACTTTTCCTGTA similar
to Pau3p/Ycr104p, PAU1 family
- YIL052C 0.510 1.261 -334 GTTCATTCCTTTG RPL34B
ribosomal protein L34B
- YDL171C 0.487 1.250 -322 TTTTCGTCCTATT GLT1
glutamate synthase (NAPDPH) (GOGAT)
- YOR293W 0.467 1.241 -231 CTCCGGTCCTTCT RPS10A
ribosomal protein S10A
- YER056C-A 0.276 1.148 -412 CTTGGTTCCTTCT RPL34A
ribosomal protein L34A
- YER131W 0.239 1.129 -52 GATATTTCCTCTT RPS26B
ribosomal protein S26B
- YMR011W 0.166 1.093 -69 CTCAATTCCTCTT HXT2
hexose permease
- YPL198W 0.138 1.079 -59 AAATCTTCCTCGT RPL7B
ribosomal protein L7B
- YMR011W 0.097 1.058 -83 GAGATTTCCTCTT HXT2
hexose permease
- Motif 2 -- TCATCG
- Seed: ATCG Obs: 24 Exp: 16.00 p-value: 0.000874
- Iterations: 8
- Information: 7.04 + 29.58 = 36.62
-
-
- Pos p-value log(p)
- -3 0.357 1.03
- -2 3.78e-05 10.18
- -1 3.77e-09 19.40
-
- 4 0.87 0.14
-
- Scoring matrix:
- T C A T C G
- -3.5 -0.9 1.2 -3.8 -3.8 -3.8
- 0.0 1.1 -3.4 -3.4 1.6 -3.4
- -0.1 -1.1 -3.4 -3.4 -3.4 1.6
- 0.7 -0.4 -3.8 1.2 -3.8 -3.8
-
- Hits with positive score
- Locus Score Weight Pos. Segment and annotation
- ----------------------------------------------------------------
- YBR232C 1.816 1.621 -60 TCATCG unknown
- YDR345C 1.816 1.621 -463 TCATCG HXT3 hexose
permease
- YIL052C 1.816 1.621 -182 TCATCG RPL34B ribosomal
protein L34B
- YKR083C 1.816 1.621 -486 TCATCG similar to
paramyosin
- YLR150W 1.816 1.621 -268 TCATCG STM1 unknown
- YLR339C 1.816 1.621 -171 TCATCG unknown
- YMR011W 1.816 1.621 -147 TCATCG HXT2 hexose
permease
- YOR293W 1.816 1.621 -586 TCATCG RPS10A ribosomal
protein S10A
- YPL090C 1.816 1.621 -378 TCATCG RPS6A ribosomal
protein S6A
- YER102W 1.119 1.421 -477 CCATCG RPS8B ribosomal
protein S8B
- YGL189C 1.119 1.421 -184 CCATCG RPS26A ribosomal
protein S26A
- YAR020C 1.058 1.399 -237 GCATCG similar to
Pau3p/Ycr104p, PAU1 family
- YKL199C 1.058 1.399 -415 GCATCG YKT9 unknown
- YLR280C 1.058 1.399 -388 GCATCG unknown
- YPL090C 1.058 1.399 -362 GCATCG RPS6A ribosomal
protein S6A
- YBR232C 0.251 1.060 -492 TTATCG unknown
- YER102W 0.251 1.060 -161 TTATCG RPS8B ribosomal
protein S8B
- YIL148W 0.251 1.060 -503 TTATCG RPL40A ribosomal
protein L40A
- YLR280C 0.251 1.060 -296 TTATCG unknown
- End of output
-