The /SampleResult/ shows the results of Clench2:

Clench2 will take in a 'reference set' and lists of 'clusters', 
then retrieve GO annotations (real time or from flat files) and 
calculate term enrichments (can do a slim mapping too if desired). 

After that, for the categories found enriched it gets the promoters, 
scans them for a (user provided) list of TF binding sites to find 
over represented sites. 

Finally it shows the following results:

1 - Overview (as a visual matrix) of TF sites found in the promoters 
    of each cluster. 

2 - Overview (as a visual matrix) of Annotations for the cluster 

3 - Overview of the expression profiles for the cluster. 

4 - A directed graph for each GO 'aspect' 
    (P = process/F = function/C = component) 

5 - An HTML table (one for P/F/C) showing:
	o genes assigned to each term, 
	o their expression profiles, 
	o TF sites in their promoters 
	o cross tabulated annotations (cross tabulated annotation = F & C
	annotations for a group of genes assigned to term XXX in aspect P)

Enriched TF sites and annotations are colored red and the thumbnails are
linked to full images. This provides a comprehensive overview of the information
about a gene list derived from a microarray experiment and allows one to make statements like: 

'The photosynthesis genes located on the chloroplast are all repressed in
response to ozone stress and have the XYZ binding site enriched in their 
promoter'.