| GOPkgBuilder {AnnBuilder} | R Documentation |
This function builds creates data, documentation, and other supporting files that consist a normal R package using data from GO.
GOPkgBuilder(pkgName = "GO", pkgPath, version = "1.2.1", srcUrl = getSrcUrl("GO", xml = TRUE), author = c(name = "who", address = "who@email.com"))
pkgName |
pkgName a character string for the name of the
data package to be built |
pkgPath |
Describe pkgPath a character string for the path
to which the data package to be built will be stored |
version |
version a character string for the version
number of the data package |
srcUrl |
srcUrl a character string for the url where the
source data that will be used to build the data package are stored |
author |
author a named vector of character string with a
name element for the name of the author and address element for the
email address of the author |
This package relies on the xml data file from http://www.godatabase.org/dev/database/archive/2003-04-01/go_200304-termdb.xml.gz to obtain the data. The url changes when data are updated. The system has built in code to figure out where the latest data are and use that data to build the data package.
This function does not return any value
This function is part of the Bioconductor project at Dana-Farber Cancer Institute to provide Bioinformatics functionalities through R
Jianhua Zhang
if(interactive()){
GOPkgBuilder(pkgName = "GO", pkgPath = tempdir(), version = "1.2.1",
srcUrl = "http://www.bioconductor.org/datafiles/wwwsources/Tgo.xml",
author = c(name = "who", address = "who@email.com"))
list.files(file.path(tempdir(), "GO"))
unlink(file.path(tempdir(), "GO"), TRUE)
}