Publications
2015
32. "Concentric-flow electrokinetic injector enables serial crystallography of ribosome and photosystem II" Raymond G Sierra, Cornelius Gati, Hartawan Laksmono, E Han Dao, Sheraz Gul, Franklin Fuller, Jan Kern, Ruchira Chatterjee, Mohamed Ibrahim, Aaron S Brewster, Iris D Young, Tara Michels-Clark, Andrew Aquila, Mengning Liang, Mark S Hunter, Jason E Koglin, Sébastien Boutet, Elia A Junco, Brandon Hayes, Michael J Bogan, Christina Y Hampton, Elisabetta V Puglisi, Nicholas K Sauter, Claudiu A Stan, Athina Zouni, Junko Yano, Vittal K Yachandra, S Michael Soltis, Joseph D Puglisi, Hasan DeMirci Nature Methods (2015). >>link to paper>>
31. "Microfluidic sorting of protein nanocrystals by size for X-ray free-electron laser diffraction" Bahige G Abdallah, Nadia A Zatsepin, Shatabdi Roy-Chowdhury, Jesse Coe, Chelsie E Conrad, Katerina Dörner, Raymond G Sierra, Hilary P Stevenson, Fernanda Camacho-Alanis, Thomas D Grant, Garrett Nelson, Daniel James, Guillermo Calero, Rebekka M Wachter, John CH Spence, Uwe Weierstall, Petra Fromme, Alexandra Ros Structural Dynamics 2, 4 (2015). >>link to paper>>
30. "Goniometer-based femtosecond X-ray diffraction of mutant 30S ribosomal subunit crystals" E Han Dao, Raymond G Sierra, Hartawan Laksmono, Henrik T Lemke, Roberto Alonso-Mori, Aaron Coey, Kevin Larsen, Elizabeth L Baxter, Aina E Cohen, S Michael Soltis, Hasan DeMirci Structural Dynamics 2, 4 (2015). >>link to paper>>
29. "X-ray emission spectroscopy of bulk liquid water in 'no-man’s land'" Jonas A Sellberg, Trevor A McQueen, Hartawan Laksmono, Simon Schreck, Martin Beye, Daniel P DePonte, Brian Kennedy, Dennis Nordlund, Raymond G Sierra, Daniel Schlesinger, Takashi Tokushima, Iurii Zhovtobriukh, Sebastian Eckert, Vegard H Segtnan, Hirohito Ogasawara, Katharina Kubicek, Simone Techert, Uwe Bergmann, Georgi L Dakovski, William F Schlotter, Yoshihisa Harada, Michael J Bogan, Philippe Wernet, Alexander Föhlisch, Lars GM Pettersson, Anders Nilsson J.Chem. Phys. 142, 4 (2015). >>link to paper>>
2014
28. "Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser" Christopher Kupitz, Shibom Basu, Ingo Grotjohann, Raimund Fromme, Nadia A Zatsepin, Kimberly N Rendek, Mark S Hunter, Robert L Shoeman, Thomas A White, Dingjie Wang, Daniel James, Jay-How Yang, Danielle E Cobb, Brenda Reeder, Raymond G Sierra, Haiguang Liu, Anton Barty, Andrew L Aquila, Daniel Deponte, Richard A Kirian, Sadia Bari, Jesse J Bergkamp, Kenneth R Beyerlein, Michael J Bogan, Carl Caleman, Tzu-Chiao Chao, Chelsie E Conrad, Katherine M Davis, Holger Fleckenstein, Lorenzo Galli, Stefan P Hau-Riege, Stephan Kassemeyer, Hartawan Laksmono, Mengning Liang, Lukas Lomb, Stefano Marchesini, Andrew V Martin, Marc Messerschmidt, Despina Milathianaki, Karol Nass, Alexandra Ros, Shatabdi Roy-Chowdhury, Kevin Schmidt, Marvin Seibert, Jan Steinbrener, Francesco Stellato, Lifen Yan, Chunhong Yoon, Thomas A Moore, Ana L Moore, Yulia Pushkar, Garth J Williams, Sébastien Boutet, R Bruce Doak, Uwe Weierstall, Matthias Frank, Henry N Chapman, John CH Spence, Petra Fromme Nature 513, 7517 (2014). >>link to paper>>
27. "Methods development for diffraction and spectroscopy studies of metalloenzymes at X-ray free-electron lasers" Jan Kern, Johan Hattne, Rosalie Tran, Roberto Alonso-Mori, Hartawan Laksmono, Sheraz Gul, Raymond G Sierra, Jens Rehanek, Alexei Erko, Rolf Mitzner, Phillip Wernet, Uwe Bergmann, Nicholas K Sauter, Vittal Yachandra, Junko Yano Phil. Trans. B 369, 1647 (2014). >>link to paper>>
26. "Taking snapshots of photosynthetic water oxidation using femtosecond X-ray diffraction and spectroscopy" Jan Kern, Rosalie Tran, Roberto Alonso-Mori, Sergey Koroidov, Nathaniel Echols, Johan Hattne, Mohamed Ibrahim, Sheraz Gul, Hartawan Laksmono, Raymond G Sierra, Richard J Gildea, Guangye Han, Julia Hellmich, Benedikt Lassalle-Kaiser, Ruchira Chatterjee, Aaron S Brewster, Claudiu A Stan, Carina Glöckner, Alyssa Lampe, Dörte DiFiore, Despina Milathianaki, Alan R Fry, M Marvin Seibert, Jason E Koglin, Erik Gallo, Jens Uhlig, Dimosthenis Sokaras, Tsu-Chien Weng, Petrus H Zwart, David E Skinner, Michael J Bogan, Marc Messerschmidt, Pieter Glatzel, Garth J Williams, Sébastien Boutet, Paul D Adams, Athina Zouni, Johannes Messinger, Nicholas K Sauter, Uwe Bergmann, Junko Yano, Vittal K Yachandra Nature Comms. 5, (2014). >>link to paper>>
25. "Ultrafast X-ray probing of water structure below the homogeneous ice nucleation temperature" JA Sellberg, C Huang, TA McQueen, ND Loh, H Laksmono, D Schlesinger, RG Sierra, D Nordlund, CY Hampton, D Starodub, DP DePonte, M Beye, C Chen, AV Martin, A Barty, KT Wikfeldt, TM Weiss, C Caronna, J Feldkamp, LB Skinner, MM Seibert, M Messerschmidt, GJ Williams, S Boutet, LGM Pettersson, MJ Bogan, A Nilsson Nature 510, 7505 (2014). >>link to paper>>
24. "Accurate macromolecular structures using minimal measurements from X-ray free-electron lasers" Johan Hattne, Nathaniel Echols, Rosalie Tran, Jan Kern, Richard J Gildea, Aaron S Brewster, Roberto Alonso-Mori, Carina Glöckner, Julia Hellmich, Hartawan Laksmono, Raymond G Sierra, Benedikt Lassalle-Kaiser, Alyssa Lampe, Guangye Han, Sheraz Gul, Dörte DiFiore, Despina Milathianaki, Alan R Fry, Alan Miahnahri, William E White, Donald W Schafer, M Marvin Seibert, Jason E Koglin, Dimosthenis Sokaras, Tsu-Chien Weng, Jonas Sellberg, Matthew J Latimer, Pieter Glatzel, Petrus H Zwart, Ralf W Grosse-Kunstleve, Michael J Bogan, Marc Messerschmidt, Garth J Williams, Sébastien Boutet, Johannes Messinger, Athina Zouni, Junko Yano, Uwe Bergmann, Vittal K Yachandra, Paul D Adams, Nicholas K Sauter Nature Methods 11, 5 (2014). >>link to paper>>
2013
23. "Toward unsupervised single-shot diffractive imaging of heterogeneous particles using X-ray free-electron lasers" Hyung Joo Park, N Duane Loh, Raymond G Sierra, Christina Y Hampton, Dmitri Starodub, Andrew V Martin, Anton Barty, Andrew Aquila, Joachim Schulz, Jan Steinbrener, Robert L Shoeman, Lukas Lomb, Stephan Kassemeyer, Christoph Bostedt, John Bozek, Sascha W Epp, Benjamin Erk, Robert Hartmann, Daniel Rolles, Artem Rudenko, Benedikt Rudek, Lutz Foucar, Nils Kimmel, Georg Weidenspointner, Guenter Hauser, Peter Holl, Emanuele Pedersoli, Mengning Liang, Mark S Hunter, Lars Gumprecht, Nicola Coppola, Cornelia Wunderer, Heinz Graafsma, Filipe RNC Maia, Tomas Ekeberg, Max Hantke, Holger Fleckenstein, Helmut Hirsemann, Karol Nass, Herbert J Tobias, George R Farquar, W Henry Benner, Stefan Hau-Riege, Christian Reich, Andreas Hartmann, Heike Soltau, Stefano Marchesini, Sasa Bajt, Miriam Barthelmess, Lothar Strueder, Joachim Ullrich, Philip Bucksbaum, Matthias Frank, Ilme Schlichting, Henry N Chapman, Michael J Bogan, Veit Elser Optics Express 21, 23 (2013). >>link to paper>>
22. "L-Edge X-ray Absorption Spectroscopy of Dilute Systems Relevant to Metalloproteins Using an X-ray Free-Electron Laser" Rolf Mitzner, Jens Rehanek, Jan Kern, Sheraz Gul, Johan Hattne, Taketo Taguchi, Roberto Alonso-Mori, Rosalie Tran, Christian Weniger, Henning Schröder, Wilson Quevedo, Hartawan Laksmono, Raymond G Sierra, Guangye Han, Benedikt Lassalle-Kaiser, Sergey Koroidov, Katharina Kubicek, Simon Schreck, Kristjan Kunnus, Maria Brzhezinskaya, Alexander Firsov, Michael P Minitti, Joshua J Turner, Stefan Moeller, Nicholas K Sauter, Michael J Bogan, Dennis Nordlund, William F Schlotter, Johannes Messinger, Andrew Borovik, Simone Techert, Frank MF de Groot, Alexander Föhlisch, Alexei Erko, Uwe Bergmann, Vittal K Yachandra, Philippe Wernet, Junko YanoJ. Phys. Chem. Letters 4, 21 (2013). >>link to paper>>
21. "Serial femtosecond X-ray diffraction of 30S ribosomal subunit microcrystals in liquid suspension at ambient temperature using an X-ray free-electron laser" Hasan Demirci, Raymond G Sierra, Hartawan Laksmono, Robert L Shoeman, Sabine Botha, Thomas RM Barends, Karol Nass, Ilme Schlichting, R Bruce Doak, Cornelius Gati, Garth J Williams, Sébastien Boutet, Marc Messerschmidt, Gerwald Jogl, Albert E Dahlberg, Steven T Gregory, Michael J Bogan Acta. Crysta. F 69, 9 (2013). >>link to paper>>
20. "Mesoscale morphology of airborne core–shell nanoparticle clusters: x-ray laser coherent diffraction imaging" E Pedersoli, ND Loh, F Capotondi, CY Hampton, RG Sierra, D Starodub, C Bostedt, J Bozek, AJ Nelson, M Aslam, S Li, VP Dravid, AV Martin, A Aquila, A Barty, H Fleckenstein, L Gumprecht, M Liang, K Nass, J Schulz, TA White, N Coppola, S Bajt, M Barthelmess, H Graafsma, H Hirsemann, C Wunderer, SW Epp, B Erk, B Rudek, A Rudenko, L Foucar, S Kassemeyer, L Lomb, D Rolles, RL Shoeman, J Steinbrener, R Hartmann, A Hartmann, G Hauser, P Holl, N Kimmel, C Reich, H Soltau, G Weidenspointner, WH Benner, GR Farquar, SP Hau-Riege, MS Hunter, T Ekeberg, M Hantke, FRNC Maia, HJ Tobias, S Marchesini, M Frank, L Strüder, I Schlichting, J Ullrich, HN Chapman, PH Bucksbaum, M Kiskinova, MJ Bogan J. Phys. B 46, 16 (2013). >>link to paper>>
19. "Sensing the wavefront of x-ray free-electron lasers using aerosol spheres" N Duane Loh, Dmitri Starodub, Lukas Lomb, Christina Y Hampton, Andrew V Martin, Raymond G Sierra, Anton Barty, Andrew Aquila, Joachim Schulz, Jan Steinbrener, Robert L Shoeman, Stephan Kassemeyer, Christoph Bostedt, John Bozek, Sascha W Epp, Benjamin Erk, Robert Hartmann, Daniel Rolles, Artem Rudenko, Benedikt Rudek, Lutz Foucar, Nils Kimmel, Georg Weidenspointner, Guenter Hauser, Peter Holl, Emanuele Pedersoli, Mengning Liang, Mark S Hunter, Lars Gumprecht, Nicola Coppola, Cornelia Wunderer, Heinz Graafsma, Filipe RNC Maia, Tomas Ekeberg, Max Hantke, Holger Fleckenstein, Helmut Hirsemann, Karol Nass, Thomas A White, Herbert J Tobias, George R Farquar, W Henry Benner, Stefan Hau-Riege, Christian Reich, Andreas Hartmann, Heike Soltau, Stefano Marchesini, Sasa Bajt, Miriam Barthelmess, Lothar Strueder, Joachim Ullrich, Philip Bucksbaum, Matthias Frank, Ilme Schlichting, Henry N Chapman, Michael J Bogan Optics Express 21, 10 (2013). >>link to paper>>
18. "Simultaneous femtosecond X-ray spectroscopy and diffraction of photosystem II at room temperature" Jan Kern, Roberto Alonso-Mori, Rosalie Tran, Johan Hattne, Richard J Gildea, Nathaniel Echols, Carina Glöckner, Julia Hellmich, Hartawan Laksmono, Raymond G Sierra, Benedikt Lassalle-Kaiser, Sergey Koroidov, Alyssa Lampe, Guangye Han, Sheraz Gul, Dörte DiFiore, Despina Milathianaki, Alan R Fry, Alan Miahnahri, Donald W Schafer, Marc Messerschmidt, M Marvin Seibert, Jason E Koglin, Dimosthenis Sokaras, Tsu-Chien Weng, Jonas Sellberg, Matthew J Latimer, Ralf W Grosse-Kunstleve, Petrus H Zwart, William E White, Pieter Glatzel, Paul D Adams, Michael J Bogan, Garth J Williams, Sébastien Boutet, Johannes Messinger, Athina Zouni, Nicholas K Sauter, Vittal K Yachandra, Uwe Bergmann, Junko Yano Science 340, 6131 (2013). >>link to paper>>
2012
17. "Single-particle structure determination by correlations of snapshot X-ray diffraction patterns" Starodub, D., Aquila, A., Bajt, S., Barthelmess, M., Barty, A., Bostedt, C., Bozek, J.D., Coppola, N., Doak, R.B., Epp, S.W., Erk, B., Foucar, L., Gumprecht, L., Hampton, C.Y., Hartmann, A., Hartmann, R., Holl, P., Kassemeyer, S., Kimmel, N., Laksmono, H., Liang, M., Loh, N.D., Lomb, L., Martin, A.V., Nass, K., Reich, C., Rolles, D., Rudek, B., Rudenko, A., Schulz, J., Shoeman, R.L., Sierra, R.G., Soltau, H., Steinbrener, J., Stellato, F., Stern, S., Weidenspointner, G., Frank, M., Ullrich, J., Struder, L., Schlichting, I., Chapman, H.N., Spence, J.C.H., Bogan, M.J. Nature Communications 3, 1276 (2012). >>link to paper>>
16. "Nanoflow Electrospinning Serial Femtosecond Crystallography" Sierra, RG, Laksmono, H, Kern, J, Hattne, J, Alonso-Mori, R, Gloeckner, C, Tran, R, Hellmich, J, Lassalle-Kaiser, B, Schafer, DW, Sellberg, J, McQueen, TA, Fry, A, Messerschmidt, M, Miahnahri, A, Seibert, MM, Hampton, CY, Starodub, D, Loh, NTD, Zwart, PH, Milathianaki, D, White, WE, Adam, PD, Boutet, S, Williams, GJ, Messinger, J, Sauter, NK, Zouni, A, Bergmann, U, Yano, J, Yachandra, VK, & Bogan, MJ. Acta Crystallographica D 68, 1584-1587 (2012). >>link to paper>> >>SLAC Today Story>> >>Patent Licensing Opportunity>>
15. "Energy-dispersive X-ray emission spectroscopy using an X-ray free-electron laser in a shot-by-shot mode" Alonso-Mori, R, Kern, J, Gildea, RJ, Sokaras, D, Weng, T, Lassalle-Kaiser, B, Tran, R, Hattne, J, Laksmono, H, Hellmich, J, Gloeckner, C, Echols, N, Sierra, RG, Sellberg, J, Schafer, DW, Kenney, C, Herbst, R, Pines, J, Hart, P, Herrmann, S, Grosse-Kunstleve, RW, Latimer, MJ, Fry, A, Messerschmidt, M, Miahnahri, A, Seibert, MM, Zwart, PH, White, WE, Adam, PD, Bogan, MJ, Boutet, S, Williams, GJ, Zouni, A, Messinger, J, Glatzel, P, Sauter, NK, Yachandra, VK, Yano, J, & Bergmann, U. Proceedings of the National Academy of Sciences 109(47), 19103-19107 (2012). >>link to paper>> >>SLAC Today Story>>
14. "Noise robust coherent diffractive imaging with a single diffraction pattern" A.V. Martin, F. Wang, N.D. Loh, T. Ekeberg, F.R.N.C. Maia, M. Hantke, G. van der Schot, C.Y. Hampton, R.G. Sierra, A. Aquila, S. Bajt, M. Barthelmess, C. Bostedt, J.D. Bozek, N. Coppola, S.W. Epp, B. Erk, H. Fleckenstein, L. Foucar, M. Frank, H. Graafsma, L. Gumprecht, A. Hartmann, R. Hartmann, G. Hauser, H. Hirsemann, P. Holl, S. Kassemeyer, N. Kimmel, M. Liang, L. Lomb, S. Marchesini, K. Nass, E. Pedersoli, C. Reich, D. Rolles, B. Rudek, A. Rudenko, J. Schulz, R. L. Shoeman, H. Soltau, D. Starodub, J. Steinbrener, F. Stellato, L. Strüder, J. Ullrich, G. Weidenspointner, T. A. White, C. B. Wunderer, A. Barty, I. Schlichting, M. J. Bogan, and H. N. Chapman Optics Express 20, 16650-16661 (2012). >>link to paper>>
13. "Fractal morphology, imaging and mass spectrometry of single aerosol particles in flight" N.D. Loh, C.Y. Hampton, A.V. Martin, D. Starodub, R.G. Sierra, A. Barty, A. Aquila, J. Schulz, L. Lomb, J. Steinbrener, R.L. Shoeman, S. Kassemeyer, C. Bostedt, J. Bozek, S.W. Epp, B. Erk, R. Hartmann, D. Rolles, A. Rudenko, B. Rudek, L. Foucar, N. Kimmel, G. Weidenspointner, G. Hauser, P. Holl, E. Pedersoli, M. Liang, M.M. Hunter, L. Gumprecht, N. Coppola, C. Wunderer, H. Graafsma, F.R.N.C. Maia, T. Ekeberg, M. Hantke, H. Fleckenstein, H. Hirsemann, K. Nass, T. A. White, H. J. Tobias, G. R. Farquar, W. H. Benner, S.P. Hau-Riege, C. Reich, A. Hartmann, H. Soltau, S. Marchesini, S. Bajt, M. Barthelmess, P. Bucksbaum, K.O. Hodgson, L. Strüder, J. Ullrich, M. Frank, I. Schlichting, H.N. Chapman and M.J. Bogan Nature 486, 513–517 (2012). >>link to paper>> >>SLAC Today Story>> >>Narrated YouTube Video>>
12. "Room temperature femtosecond X-ray diffraction of photosystem II microcrystals." Jan Kern, Roberto Alonso-Mori, Julia Hellmich, Rosalie Tran, Johan Hattne, Hartawan Laksmono, Carina Glöckner, Nathaniel Echols, Raymond G. Sierra, Jonas Sellberg, Benedikt Lassalle-Kaiser, Richard J. Gildea, Pieter Glatzel, Ralf W. Grosse-Kunstleve, Matthew J. Latimer, Trevor A. McQueen, Dörte DiFiore, Alan R. Fry, Marc Messerschmidt, Alan Miahnahri, Donald W. Schafer, M. Marvin Seibert, Dimosthenis Sokaras, Tsu-Chien Weng, Petrus H. Zwart, William E. White, Paul D. Adams, Michael J. Bogan, Sébastien Boutet, Garth J. Williams, Johannes Messinger, Nicholas K. Sauter, Athina Zouni, Uwe Bergmann, Junko Yano, and Vittal K. Yachandra Proceedings of the National Academy of Sciences 109, 9721–9726 (2012). >>link to paper>> >>SLAC Today Story>>
11. "Femtosecond dark-field imaging with an X-ray free electron laser." A.V. Martin, N.D. Loh, C.Y. Hampton, R.G. Sierra, F. Wang, A. Aquila, S. Bajt, M. Barthelmess, C. Bostedt, J.D. Bozek, N. Coppola, S.W. Epp, B. Erk, H. Fleckenstein, L. Foucar, M. Frank, H. Graafsma, L. Gumprecht, A. Hartmann, R. Hartmann, G. Hauser, H. Hirsemann, P. Holl, S. Kassemeyer, N. Kimmel, M. Liang, L. Lomb, F.R.N.C. Maia, S. Marchesini, K. Nass, E. Pedersoli, C. Reich, D. Rolles, B. Rudek, A. Rudenko, J. Schulz, R.L. Shoeman, H. Soltau, D. Starodub, J. Steinbrener, F. Stellato, L. Strüder, J. Ullrich, G. Weidenspointner, T.A. White, C.B. Wunderer, A. Barty, I. Schlichting, M.J. Bogan, and H.N. Chapman Optics Express 20, 13501-13512 (2012). >>link to paper>>
10. "Femtosecond free-electron laser X-ray diffraction data sets for algorithm development." Stephan Kassemeyer, Jan Steinbrener, Lukas Lomb, Elisabeth Hartmann, Andrew Aquila, Anton Barty, Andrew V. Martin,Christina Y. Hampton, Saša Bajt, Miriam Barthelmess, Thomas R.M. Barends, Christoph Bostedt, Mario Bott, John D. Bozek,Nicola Coppola, Max Cryle, Daniel P. DePonte, R. Bruce Doak,Sascha W. Epp, Benjamin Erk, Holger Fleckenstein, Lutz Foucar,Heinz Graafsma, Lars Gumprecht, Andreas Hartmann, Robert Hartmann, Günter Hauser, Helmut Hirsemann, André Hömke,Peter Holl, Olof Jönsson, Nils Kimmel, Faton Krasniqi, Mengning Liang, Filipe R.N.C. Maia, Stefano Marchesini, Karol Nass,Christian Reich, Daniel Rolles, Benedikt Rudek, Artem Rudenko,Carlo Schmidt, Joachim Schulz, Robert L. Shoeman, Raymond G. Sierra, Heike Soltau, John C. H. Spence, Dmitri Starodub,Francesco Stellato, Stephan Stern, Gunter Stier, Martin Svenda,Georg Weidenspointner, Uwe Weierstall, Thomas A. White,Cornelia Wunderer, Matthias Frank, Henry N. Chapman,Joachim Ullrich, Lothar Strüder, Michael J. Bogan, and Ilme Schlichting Optics Express 20, 4149-4158 (2012). >>link to paper>>
9. "In vivo protein crystallization opens new routes in structural biology." Koopmann, R, Cupelli, K, Redecke, L, Nass, K, Deponte, D, White, TA, Stellato, F, Rehders, D, Liang, M, Andreasson, J, Aquila, A, Bajt, S, Barthelmess, M, Barty, A, Bogan, MJ, Bostedt, C, Bozek, J, Caleman, C, Coppola, N, Davidsson, J, Doak, B, Ekeberg, T, Epp, S, Erk, B, Fleckenstein, H, Foucar, L, Graafsma, H, Gumprecht, L, Hajdu, J, Hampton, CY, Hartmann, R, Hauser, G, Hirsemann, H, Holl, P, Hunter, MS, Kassemeyer, S, Kimmel, N, Kirian, R, Lomb, L, Maia, FRNC, Martin, AV, Reich, C, Rolles, D, Rudek, B, Rudenko, A, Schlichting, I, Schulz, J, Seibert, MM, Shoeman, RL, Sierra, RG, Soltau, H, Stern, S, Struder, L, Timneanu, N, Ullrich, J, Wang, X, Weidenspointer, G, Weierstall, U, Wunderer, C, Fromme, P, Spence, JCH, Stehle, T, Chapman, HN, Betzel, C, & Duszenko, M. Nature Methods 9, 259-262 (2012). >>link to paper>>
8. "Lipidic phase membrane protein serial femtosecond crystallography." Johansson, LC, Arnlund, D, White, TA, Katona, G, Deponte, D, Weierstall, U, Doak, RB, Shoeman, RL, Lomb, L, Malmerberg, E, Davidsson, J, Nass, K, Liang, M, Andreasson, J, Aquila, A, Bajt, S, Barthelmess, M, Barty, A, Bogan, MJ, Bostedt, C, Bozek, J, Caleman, C, Coffee, R, Coppola, N, Ekeberg, T, Epp, SW, Erk, B, Fleckenstein, H, Foucar, L, Fromme, P, Graafsma, H, Gumprecht, L, Hajdu, J, Hampton, CY, Hartmann, R, Hartmann, A, Hauser, G, Hirsemann, H, Holl, P, Holton, J, Hunter, MS, Kassemeyer, S, Kimmel, N, Kirian, R, Maia, FNC, Marchesini, S, Martin, AV, Reich, C, Rolles, D, Rudek, B, Rudenko, A, Schlichting, I, Schulz, A, Seibert, MM, Sierra, RG, Soltau, H, Starodub, D, Stellato, F, Stern, ES, Struder, L, Timneanu, N, Ullrich, J, Wang, X, Weidenspointer, G, Wunderer, C, Chapman, HN, Spence, JCH, & Neutze, R. Nature Methods 9, 263-265 (2012). >>link to paper>>
7. "Time-resolved protein nanocrystallography using an X-ray free-electron laser." Aquila, A, Hunter, MS, Doak, RB, Kirian, RA, Fromme, P, White, TA, Andreasson, J, Arnlund, D, Bajt, S, Barends, TRM, Barthelmess, M, Bogan, MJ, Bostedt, C, Bottin, H, Bozek, JD, Caleman, C, Coppola, N, Davidsson, J, Deponte, D, Elser, V, Epp, SW, Erk, B, Fleckenstein, H, Foucar, L, Frank, F, Fromme, R, Graafsma, H, Grotjohann, I, Gumprecht, L, Hajdu, J, Hampton, CY, Hartmann, A, Hartmann, R, Hau-Riege, SP, Hauser, G, Hirsemann, H, Holl, P, Holton, JM, Homke, A, Johansson, L, Kimmel, N, Kassemeyer, S, Krasniqi, F, Kuhnel, KU, Liang, M, Lomb, L, Malmerberg, E, Marchesini, S, Martin, AV, Maia, FRNC, Messerschmidt, M, Nass, K, Reich, C, Neutze, R, Rolles, D, Rudek, B, Rudenko, A, Schlichting, I, Schmidt, C, Schmidt, KE, Schulz, J, Seibert, MM, Shoeman, RL, Sierra, RG, Soltau, H, Starodub, D, Stellato, F, Stern, S, Struder, L, Timneanu, N, Ullrich, J, Wang, X, Williams, G, Weidenspointer, G, Weierstall, U, Wunderer, C, Barty, A, Spence, JCH, & Chapman, HN. Optics Express 20, 2706-2716 (2012). >>link to paper>>
2011
6. "Radiation damage in protein serial femtosecond crystallography using an X-ray free-electron laser." Lomb, L, Barends, T, Kassemeyer, S, Aquila, A, Epp, SW, Erk, B, Foucar, L, Hartmann, R, Rudek, B, Rolles, D, Rudenko, A, Shoeman, RL, Andreasson, J, Bajt, S, Barthelmess, M, Barty, A, Bogan, MJ, Bostedt, C, Bozek, JD, Caleman, C, Coffee, R, Coppola, N, DePonte, DP, Doak, RB, Ekeberg, T, Fleckenstein, H, Fromme, P, Gebhardt, M, Graafsma, H, Gumprecht, L, Hajdu, J, Hampton, CY, Hartmann, A, Hauser, G, Hirsemann, H, Holl, P, Holton, J, Hunter, MS, Kabsch, W, Kimmel, N, Kirian, RA, Liang, M, Maia, FRNC, Meinhart, A, Marchesini, S, Martin, AV, Nass, K, Reich, C, Schulz, J, Seibert, MM, Sierra, RG, Soltau, H, Spence, JCH, Steinbrener, J, Stellato, F, Stern, S, Timneanu, N, Wang, X, Weidenspointner, G, Weierstall, U, White, TA, Wunderer, C, Chapman, HN, Ullrich, J, Struder, L, & Schlichting, I. Physical Review B 84, 1-6 (2011). >>link to paper>>
5. "Self-terminating X-ray diffraction gates femtosecond serial nanocrystallography measurements." Barty, A, Caleman, C, Aquila, A, Timneanu, N, Lomb, L, White, TA, Andreasson, J, Arnlund, D, Bajt, S, Barends, T, Barthelmess, M, Bogan, MJ, Bostedt, C, Bozek, JD, Coffee, R, Coppola, N, Davidson, J, DePonte, DP, Doak, RB, Ekeberg, T, Elser, V, Epp, SW, Erk, B, Fleckenstein, H, Foucar, L, Fromme, P, Graafsma, H, Gumprecht, L, Hajdu, J, Hampton, CY, Hartmann, R, Hartmann, A, Hauser, G, Hirsemann, H, Holl, P, Hunter, MS, Johansson, L, Kassemeyer, S, Kimmel, N, Kirian, RA, Liang, M, Maia, FRNC, Malmerberg, E, Marchesini, S, Martin, AV, Nass, K, Neutze, R, Reich, C, Rolles, D, Rudek, B, Rudenko, A, Scott, H, Schlichting, I, Schulz, J, Seibert, MM, Shoeman, RL, Sierra, RG, Soltau, H, Spence, JCH, Stellato, F, Stern, S, Struder, L, Ullrich, J, Wang, X, Weidenspointer, G, Weierstall, U, Wunderer, C, & Chapman, HN. Nature Photonics 6, 35-40 (2011). >>link to paper>>
4. "Unsupervised classification of single-particle X-ray diffraction snapshots by spectral clustering." C.H. Yoon, P. Schwander, C. Abergel, I. Andersson, J. Andreasson, A. Aquila, S. Bajt, M. Barthelmess, A. Barty, M.J. Bogan, C. Bostedt, J. Bozek, H. N. Chapman, J.M. Claverie, N. Coppola, D.P. DePonte, T. Ekeberg, S.W. Epp, B. Erk, H. Fleckenstein, L. Foucar, H. Graafsma, L. Gumprecht, J. Hajdu, C.Y. Hampton, A. Hartmann, E. Hartmann, R. Hartmann, G. Hauser, H. Hirsemann, P. Holl, S. Kassemeyer, N. Kimmel, M. Kiskinova, M. Liang, N.T.D. Loh, L. Lomb, F.R.N.C. Maia, A.V. Martin, K. Nass, E. Pedersoli, C. Reich, D. Rolles, B. Rudek, A. Rudenko, I. Schlichting, J. Schulz, M. Seibert, V. Seltzer, R.L. Shoeman, R.G. Sierra, H. Soltau, D. Starodub, J. Steinbrener, G. Stier, L. Strüder, M. Svenda, J. Ullrich, G. Weidenspointner, T.A. White, C. Wunderer, and A. Ourmazd Optics Express 17, 16542-16549 (2011). >>link to paper>>
3."Femtosecond x‐ray protein nanocrystallography." H Chapman, P Fromme, A Barty, T White, R Kirian, A Aquila, M Hunter, J Schulz, D Deponte, U Weierstall, Doak, B, Maia, F, Martin, A, Schlichting, I, Lomb, L, Coppola, N, Shoeman, R, Epp, S, Hartman, R, Rolles, D, Rudenko, A, Foucar, L, Kimmel, N, Weidenspointner, G, Holl, P, Liang, M, Barthelmess, M, Caleman, C, Boutet, S, Bogan, M, Kryzwinski, J, Bostedt, C, Bajt, S, Gumprecht, L, Rudek, B, Erk, B, Schmidt, C, Homke, A, Reich, C, Pietschner, D, Struder, L, Hauser, G, Gorke, H, Ullrich, J, Herrmann, S, Schaller, G, Schopper, F, Soltau, H, Kuhnel, K, Messerschmidt, M, Bozek, J, Hau‐Riege, S, Frank, M, Hampton, C, Sierra, R, Starodub, D, Williams, G, Hajdu, J, Timneanu, N, Seibert, M, Andreasson, J, Rocker, A, Jonsson, O, Stern, S, Nass, K, Andritschke, R, Schroter, C, Frasniqi, F, Boe, M, Schmidt, K, Wang, X, Grotjohann, I, Holton, J, Marchesini, S, Schorb, S, Rupp, D, Adolph, M, Gorkhover, T, Hirsemann, H, Potdevin, G, Graafsma, H, Nilsson, B and Spence, J. Nature 470, 73-77 (2011). >>link to paper>>
2. "Single Mimivirus particles intercepted and imaged with an X-ray laser." Seibert, M. M., Ekeberg, T., Maia, F., Svenda, M., Andreasson, J., Jonsson, O., Odic, D., Iwan, B., Rocker, A., Westphal, D., Deponte, D., Barty, A., Schulz, J., Gumprecht, L., Coppola, N., Aquila, A., Menging, L., White, T., Martin, A., Caleman, C., Stern, S., Abergel, C. C., Seltzer, V., Claverie, J. M., Bostedt, C., Bozek, J. D., Boutet, S., Miahnahri, A. A., Messerschmidt, M., Krzywinski, J., Williams, G., Hodgson, K. O., Bogan, M. J., Hampton, C. Y., Sierra, R. G., Starodub, D., Andersson, I., Bajt, S., Barthelmess, M., Spence, J. C. H., Fromme, P., Weierstall, U., Kirian, R., Hunter, M., Doak, R. B., Marchesini, S., Hau-Riege, S. P., Frank, M., Shoeman, R. L., Lomb, L., Epp, S. W., Hartman, R. L., Rolles, D., Rudenko, A., Schmidt, C., Foucar, L., Kimmel, N., Holl, P., Rudek, B., Erk, B., Homke, A., Reich, C., Pietschner, D., Weidenspointner, G., Struder, L., Hauser, G., Gorke, H., Ullrich, B., Schlichting, I., Herrmann, S., Schaller, G., Schopper, F., Soltau, H., Kuhnel, K. U., Andritschke, R., Schroter, C. D., Krasniqi, F., Bott, M., Schorb, S., Rupp, D., Adolph, M., Gorkhover, T., Hirsemann, H., Potdevin, G., Graafsma, H., Nilsson, B., Chapman, H. N. and Hajdu, J. Nature 470, 78-81 (2011). >>link to paper>>
2010
1. “Single Particle Coherent Diffractive Imaging with a Soft X-ray Free Electron Laser: Towards Soot Aerosol Morphology” Bogan, M., Starodub, D., Hampton, C. Y., Sierra R. G. J. Phys. B: Atom., Mol. Optics 43, 194013 (2010)-invited article to the SPECIAL ISSUE: INTENSE X-RAY SCIENCE: THE FIRST 5 YEARS OF FLASH >>link to paper>>
Conference Proceedings
3. "Profiling structured beams using injected aerosols." N. D. Loh ; Dmitri Starodub ; Lukas Lomb ; Christina Y. Hampton ; Andrew V. Martin ; Raymond G. Sierra ; Anton Barty ; Andrew Aquila ; Joachim Schulz ; Jan Steinbrener ; Robert L. Shoeman ; Stephan Kassemeyer ; Christoph Bostedt ; John Bozek ; Sascha W. Epp ; Benjamin Erk ; Robert Hartmann ; Daniel Rolles ; Artem Rudenko ; Benedikt Rudek ; Lutz Foucar ; Nils Kimmel ; Georg Weidenspointner ; Günther Hauser ; Peter Holl ; Emanuele Pedersoli ; MengNing Liang ; Mark S. Hunter ; Lars Gumprecht ; Nicola Coppola ; Cornelia Wunderer ; Heinz Graafsman ; Filipe R. N. C. Maia ; Tomas Ekeberg ; Max Hantke ; Holger Fleckenstein ; Helmut Hirsemann ; Karol Nass ; Thomas A. White ; Herbert J. Tobias ; George R. Farquar ; W. Henry Benner ; Stefan Hau-Riege ; Christian Reich ; Andreas Hartmann ; Heike Soltau ; Stefano Marchesini ; Sasa Bajt ; Miriam Barthelmess ; Lothar Strueder ; Joachim Ullrich ; Philip Bucksbaum ; Keith O. Hodgson ; Mathias Frank ; Ilme Schlichting ; Henry N. Chapman ; Michael J. Bogan X-Ray Free-Electron Lasers: Beam Diagnostics, Beamline Instrumentation, and Applications, 8504, 850403 (2012). >>link to paper>>
2. "Single particle imaging with soft X-rays at the Linac Coherent Light Source." A.V. Martin, J. Andreasson, A. Aquila, S. Bajt, T. Barends, M. Barthelmess, A. Barty, W.H. Benner, C. Bostedt, J.D. Bozek, C. Caleman, N. Coppola, D.P. DePonte, T. Ekeberg, S.W. Epp, B. Erk, G. Farquar, H. Fleckenstein, L. Foucar, M. Frank, L. Gumprecht, C.Y. Hampton, A. Hartmann, E. Hartmann, R.L. Hartman, G. Hauser, P. Holl, A. Hoemke, O. Jonsson, S. Kassemeyer, N. Kimmel, M. Kiskinova, F. Krasniqi, J. Krywinski, M. Liang, N.T.D. Loh, L. Lomb, F.R.N.C. Maia, S. Marchesini, K. Nass, D. Odic, E. Pedersoli, C. Reich, D. Rolles, B. Rudek, A. Rudenko, C. Schmidt, I. Schlichting, J. Schulz, M.M. Seibert, R.L. Shoeman, R. G. Sierra, H. Soltau, D. Starodub, J. Steinbrener, F. Stellato, L. Struder, M. Svenda, J. Ullrich, G. Weidenspointer, D. Westphal, T.A. White, G. Williams, J. Hajdu, I. Schlichting, M.J. Bogan, H.N. Chapman Proceedings of SPIE: Advances in x-ray free electron lasers, 8078, 807809 (2011). >>link to paper>>
1. "Real-Time Quartz Crystal Microbalance Detection of Aerosols Emitted from a Re-entrant Aerodynamic Focusing Inlet." C. Y. Hampton , R. G. Sierra , M. Frank , M. J. Bogan American Association of Aerosol Research 29th Annual Conference, (2010). >>link to paper>>
Patents
1. Bogan, M.; Sierra, R.G.; Laksmono, H.L. “Apparatus and Method for Nanoflow Serial Femtosecond X-ray Protein Crystallography” Provisional Patent, June 2012 >>Patent Licensing Opportunity>>
Honors
2008 Ford Diversity Fellowship Program, Honorable Mention
2008 Alfred P. Sloan Minority Ph.D. Program Fellow
2007 Stanford Mechanical Enginering Departmental Graduate Fellowship
2007 GEM Minority Fellowship, Declined
