Bioe220/Rad220: Intro to Imaging and Image-based Anatomy

Lecture Notes, Reading Assignments 2019-2020

Jan 6 – Introduction, Imaging Language, The Bony Anatomy

Reading Assignments
- Bushberg (2nd Ed) 3-15, 17-24
- Bushberg (3rd Ed) 3-11, 15-17
- Weir 5th Edition: Introduction, Radiographs of the bony anatomy scattered throughout
- IntroReading.pdf

Handouts
- Class1_CourseIntro.pdf
- Class1_BonyAnatomy.pdf

Jan 8 – Radiography

Reading Assignments Radiography
- Bushberg (2nd Ed) 37-48, 98-105, 145-148, 166-173, 191-193, 207-210, 278-279
- Bushberg (3rd Ed) 18-28, 36, 38-51, 171-180, 207-209, 230-236, 238-240, 253-258
Handouts
- Class2_Radiography1.pdf
- Class2_Radiography2.pdf
- I linked up last year's recording since this year, I failed to turn on the audio.

Jan 13 – The Chest, Mammo, & Cardiovasculature

Reading Assignments
- Weir 5th Edition: 90-95, 96-119, 121-128
Handouts
- Class3ChestMammoCV.pdf

Jan 15 – CT and Radiation Safety

Reading Assignments
- Bushberg (2nd Ed) 327-330, 349-354, 356-360, 739-749
- Bushberg (3rd Ed) 312-325, 350-354, 837-844
Handouts
- Class4CT.pdf
- Class4RadiationSafety.pdf

Jan 20 – no class

Jan 21 – Image Processing Lab @ 5pm, same room

Bring a mac laptop loaded with Horos if you can

Handouts

Jan 22 – MRI: Magnetization and Precession, Relaxation 1

Reading Assignments
- Keller 5-12 (see the books page to download this pamphlet)
- Bushberg (2nd Ed) 373-403
- Bushberg (3rd Ed) 402-416
Handouts
- Class5_MRI1_SignalNT1.pdf

Jan 27 – The Gastrointestinal System

Reading Assignments
- Weir 5th Edition: 129-153, 179-198
Handouts
- Class6GISystem.pdf

Jan 29 – MRI: Relaxation 2, Fat, Gad

Reading Assignments
- Keller 21-23
- Bushberg (2nd Ed) 391-393, 453-455
- Bushberg (3rd Ed) 417-430, 480-483
Handouts

Feb 3 – The Genitourinary System

Reading Assignments
- Weir 5th Edition: 154-178, 200-205
Handouts
- Class8GU.pdf

Feb 5 – MRI: Frequency Encoding, Spin Echoes, MRA

- Keller 13-18, 24-26
- Bushberg (2nd Ed) 415-433
- Bushberg (3rd Ed) 431-434, 438-442, 449-452, 464-467
Handouts
- Class9AdditionalContrasts.pdf
- Class9SpinEchoesvGradientEchoes.pdf

Feb 10 – Midterm 1 and Localization

Midterm 1 covers
- Radiography
- CT and Radiation Safety
- The Bony Anatomy
- Chest, Mammo, CV
- The GI system
- The GU system
- MidtermExample.pdf
- MidtermExampleAnswers.pdf
- MidtermExampleMovie1.mov
- MidtermExampleMovie2.mov
- Midterm1Answers.pdf

Reading Assignments
- Bushberg (3rd Ed) 471-473
- Weir 5th Edition: 249
Handouts
- Class10_MRILocalization.pdf

Feb 12 – Muscles and Joints

Reading Assignments
- Weir 5th Edition: 65-89, 208-236
Handouts
- Class11MSK.pdf

Feb 17 – no class

Feb 19 – Brain 1: Intro to CNS and Brain Anatomy

Reading Assignments
- Weir 5th Edition: 7-22
- NeuroReading1.pdf pages 13-16, 18, 20, 22, 28, 30, 38
Handouts
- Class12Brain1.pdf
- Class12Brain2.pdf

Feb 24 – Midterm 2, Slice Selection and Scan Time

Midterm 2 covers
- MR through Feb 5
- Muscles and Joints
- what was covered in Midterm 1 with less emphasis
- Midterm2Coverage.png
Reading Assignments
- Bushberg (3rd Ed) 469-471
- Weir 5th Edition: 244-248
Handouts
- Midterm2Solutions.pdf

Feb 26 – Brain 2: Rest of Brain Anatomy, Meninges, Vasculature

- Weir 5th Edition: 1-6
Handouts
- Class13MeningesNeurovascular.pdf

Mar 2 – Paranasal Sinuses, Head and Neck Structures

Reading Assignments
- Weir 5th Edition: 23-41, 42-52
Handouts
- Class14ParanasalSinusesAndNeck.pdf

Mar 4 –The Spine and Spinal Cord

Reading Assignments
- Weir 5th Edition: 53-64
Handouts

Mar 9 – Physics Review and Body Cases/Review

Handouts
- Class16DWI_PWI_fMRI.pdf

Mar 11 – Physics Review and Brain Cases/Review

Mar 17 – Final exam (8:30am - 11:30am)

The final covers
- All Brain material
- fMRI, PWI, DWI
- everything else in the course with less emphasis
- FinalCoverage.png