Serotype 1 (Oxford strain)

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     ccaagagggg ggtggtgatt ggcctttggc ttatcagtgt atagataaca tttctctgct        60
     cgtttaccat acaattaaca acaagatggc acacggtgag ccatactata gctctaaacc       120
     tgacaaagat ttcaattttg gaagcacaat ggcacgtagg cagatgacac ctactatggt       180
     aataaagctt cccaaatttg ttaggaattc tccacaagcc tacgattgga tcgtaagagg       240
     tctaatcttt cccaccattg gtaaaactta tttccaacga gttgttgtga ttactggtgg       300
     gcttgaggat ggaacatatg gctcattcgc atttgacggt aaagagtggg tagggatcta       360
     cccaatagag catttgaatc tcatgtcatc tctgaaactg atacacaaag ccaacgctct       420
     tcaggagaga ctgcgtctct cccaagaaga gaaagccacc ctcgctctgg acgtgcaatt       480
     ccttcaacat gaaaacgtgc gattgaagga gttgattcca aaaccagagc cacggaaaat       540
     acagatgaag tggataataa tgggagcagt gcttacattc ttatctctga tacctggggg       600
     ttatgcgcac agccagacca acaacaccat atttactgac atgatagctg cctgcaagta       660
     ctcaactgag acactaacag aaaaccttga ccttagaatc aagcttgcac tagcaaacat       720
     aaccatcagt gataagctag atgctgtgag gcaaattctt aactttgcct ttgtgcccag       780
     agcccattgg ttgagaactg tattctatta tatccattac tatgaaatgt ggaatatttt       840
     tatgtttgtt cttgctattg gtactgtcat ggggagtgcc cgccctggta cagacttgat       900
     tacactcgca acatcccact tgtctggttt taggatggct gttctaccca caattccatt       960
     tcacaccact atgactttgt gggttatgaa cacacttatg gtttgttact attttgacaa      1020
     cttgctagca ataacattgg caatcttagc accaatcctt ggcattatct tcttgtgctt      1080
     catggaagac tccaactatg tgagccagat acgtggcctt attgctacag cagtattaat      1140
     tgctggtggg cacgcatgtt tgacactcac aggcacgacc acgtcattgt ttgttgtcat      1200
     actaacctgt aggttcatac gtatggcaac cgttttcatt ggcaccagat tcgagatccg      1260
     tgacgctaat ggaaaggtcg tggccactgt accaactagg atcaaaaatg ttgcatttga      1320
     cttcttccag aagctgaagc agtcaggggt gcgagttgga gtcaacgaat ttgttgtcat      1380
     aaaaccaggt gcattatgtg ttatagacac ccctgaagga aaagggacag gtttcttttc      1440
     tggcaatgac atagtaacag cagcacatgt tgttggcaat aatacttttg tgaatgtgtg      1500
     ctatgagggt ttgatgtatg aagcgaaggt gcggtacatg cccgaaaagg atatagcatt      1560
     cgtaacttgt cctggtgact tgcatccaac agcaagatta aaattatcaa agaacccaga      1620
     ttatagttgt gtcacagtta tggcttatgt gaatgaagat cttgtggttt caaccgcagc      1680
     agctatggtg catggtaaca ctctttcata tgcagttcgc actcaggacg ggatgtcggg      1740
     tgcaccagtt tgtgacaaat atggtcgggt gttagcagtc catcaaacta acactgggta      1800
     tactggaggt gctgtcataa tagacccagc agacttccat ccagtgaaag ccccatctca      1860
     ggtggaattg ctcaaagagg aaatagagcg gctaaaagcc caactgaact ctgccactga      1920
     gaacgtaacg actgttgtta cacaacaacc tagtgttgca ctagaacaga aaagtgtcag      1980
     cgatagtgat gtagttgacc ttgtcagaac tgcaatggaa cgtgaaatga aggtgctgcg      2040
     tgatgaaatc aatggaatac ttgcaccatt cctacaaaaa aagaaaggca agaccaagca      2100
     tggtaggggt agagtcaggc gtaaccttag aaaaggtgtg aaacttctta ctgaggaaga      2160
     gtatcgagaa ctcttagaga aaggtttaga tcgtgagaca ttccttgatc tcatagaccg      2220
     cattattggt gagaggtctg gctaccctga ctatgatgat gaagattact atgatgaaga      2280
     tgatgatggc tggggaatgg ttggtgatga tgtagaattt gattatactg aagtaattaa      2340
     ctttgaccaa gcaaaaccaa ttcctgccct gagaacaacc aagccaaaaa cttgccccga      2400
     accagaagtc gaatcacaac cacttgattt gtcccaaaag aaagagaaac aatcagaata      2460
     tgaacaacaa gtggtgaagt ctatcaagcc tcagaagagt gagccccaac catactcaca      2520
     aacttacggc aaggcaccaa tctgggaatc ttacgatttt gactggaatg aggatgatgc      2580
     caagtttatt ctgccagcgc cacaccggtt gactaaggca gatgaaatag tccttggatc      2640
     taaaatcgtc aagcttagaa cgattattga aacagccata aagactcaga attatagtgc      2700
     attacctgaa gcagtatttg agctcgacaa agcagcttat gaagcaggtt tggaaggttt      2760
     cctccaaagg gttaaatcaa aaaacaaggc cccaaaaaac tacaaagggc cccagaagac      2820
     caaggggccc aaaattacca ctcattagat gcgtggaaat tgttgctaga gcctccgcgg      2880
     gagcggaggt gcgtgcctgc taattttcca ttattaggcc atttaccaat taatagaccc      2940
     atctttgatg ataagaaacc cagggacgat ctccttggtc tacttccaga accaacctgg      3000
     catgcttttg aggaatacgg accaaccaca tggggcccac aagcttttat caaatctttt      3060
     gataaatttt tttatgcaga accaattgac tttttctcag aatatccaca gttgtgtgct      3120
     ttcgctgatt gggcaactta tcgcgagttt cggtatctag aggataccag agtgatacac      3180
     ataactgcaa ctgagaaaaa cactgattca acacctgctt atcctaaaat gaattatttt      3240
     gatactgaag aaaattactt ggaagcacat ggttgggcac catatattag agaattcact      3300
     agggtcttca aaggagacaa acctgaagta ctttggtacc tatttcttaa gaaagagatc      3360
     attaaggagg aaaaaattag gaattctgat atccggcaga tagtgtgtgc cgaccccatt      3420
     tacaccagga taggggcgtg cttagaggcg catcagaatg ccttgatgaa acagcatacc      3480
     gacacctcag ttggtcaatg tgggtggtca ccaatggaag gcggctttaa aaaaaccatg      3540
     cagcgcctag taaataaagg gaataaacac tttattgaat tcgactggac ccgctatgat      3600
     ggaactatac caccagcact ctttaaacac atcaaagaaa ttaggtggaa tttcatcaat      3660
     aaagaccaac gtgaaaagta cagacatgta catgaatggt atgttgacaa cctccttaat      3720
     cgccatgtac ttctaccatc tggtgaagtc accttgcaga cacgaggtaa tccatctggg      3780
     cagttttcaa caacaatgga taataacatg gtcaattttt ggttacaggc ttttgagttt      3840
     gcttatttta atggcccaga cagagacctt tggaagacct atgacactgt agtttatgga      3900
     gatgacaggc tttctacaac accttcggtg cctgatgatt atgaggagag agtgattact      3960
     atgtatagag acatctttgg catgtgggtt aagcctggga aggttatctg tagagacagc      4020
     atagttggat tatccttttg tggctttact gttaacgaaa accttgagcc cgtgccaact      4080
     tctcctgaaa agctaatggc atcactgtta aaaccttaca aaatactacc tgatcttgaa      4140
     tcactccatg ggaagctcct atgctatcag ttgcttgctg cgttcatggc agaggaccac      4200
     ccctttaagg tgtatgtgga gcactgcctc tcacggactg caaagcagct tcgtgactct      4260
     ggccttccag ccagactcac agaagagcaa ctccatcgca tttggagggg aggaccaaag      4320
     aagtgtgatg gctagcaagt ccaataagca ggtaactgtt gaggtcagta ataatggccg      4380
     caacaggagt aaatcaaggg cccgttcaca atctaggggc cgagataaat cagtcaagat      4440
     tacagtcaat tcaagaaaca gagccaggag acagcccgga cgcgacaaac gtcaatcttc      4500
     tcaacgtgtc cgtaacattg tcaataagca actcaggaaa cagggtgtca caggaccaaa      4560
     acctgcaata tgtcagagag caacagcaac ccttgggacg gtcgggtcaa acaccagtgg      4620
     caccactgag attgaggcgt gtattctcct caaccctgtc ctcgttaagg acgctactgg      4680
     aagcactcag tttggccctg tgcaggcgct aggtgcacag tattccatgt ggaagctgaa      4740
     gtatttgaat gtcaaattaa cctctatggt tggtgcatct gctgttaatg gtactgtcct      4800
     cagggtctca cttaacccca catctacgcc atcttctact agttggtcag gattaggtgc      4860
     gcgtaaacat cttgatgtca cggttggtaa gaatgcaaca tttaaactga aaccttctga      4920
     ccttggtgga cctagggatg gttggtggct cacaaacacc aacgacaatg catctgacac      4980
     cctgggaccc tccattgaaa tacacacact cggacgaaca atgtcctcat acaagaatga      5040
     gcagtttaca ggggggctat ttttggttga acttgcttca gagtggtgct ttacaggtta      5100
     tgctgccaac ccaaaccttg ttaatttggt caagtcaaca gataatcaag tacctgtgac      5160
     atttgaagga agtgctggat caccattaat aatgaatgtg tcagagggga gccattttgc      5220
     acgaacagtt cttgcacgct caacaacacc aaccactcta gcgcgtgcag gagagagaac      5280
     cacctcagac acagtatggc aggtgctcaa tacagctgta tctgctgctg agcttgtcac      5340
     gcctcctccg ttcaattggt tagttaaagg aggttggtgg tttgtgaaac ttattgccgg      5400
     gagaaccaga actggctctc gtagcttcta tgtgtatccc agctaccaag atgctttgtc      5460
     caataagcca gcactctgca ccggcagcac tccaggaggc atgaggacgc ggaatcctgt      5520
     gacaacaacc ctacagttca cacaaatgaa ccaacctagt ctagggcacg gtgaagcacc      5580
     agctgcgatt ggtagatcca ttccagcacc tggtgaggag tataaagttg tcctcacatt      5640
     tggatcccca atgagcccta atgcaaataa caaacagact tgggttaata aacctcttga      5700
     tgcgccttcg ggccattaca atgtgaaaat tgcaaaggat gttgaccact atctaaccat      5760
     gcagggtttc acttctatag catctgttga ctggtacact atagattttc aaccatctga      5820
     ggcgcctgcc ccgataaaag gcttgcaggt acttgtgaac atctcgaaaa aagctgatgt      5880
     gtatgccgtc aaacaatttg tcacagcgca gaccaacaac aagcaccagg ttacaagcct      5940
     gttcctagta aaagtaacaa ctggttttca ggtgaacaac tacctgagtt acttttacag      6000
     ggcgtctgct actggggatg ccacaactaa cctgttggtt agaggagaca catacacagc      6060
     agggataagt tttacccagg gtggatggta tttgttgaca aatacatcta ttgttgatgg      6120
     ggctatgcca cctggctggg tctggaataa cgtggaactt aaaactaaca cagcgtatca      6180
     catggacaaa ggcttggtcc atctaataat gcctttgcct gagtccacgc aaatgtgtta      6240
     tgagatgctg acatctattc cacgctccag ggcatctggt catggttatg agagtgacaa      6300
     catcgaatac ttggatgctc cagactctgc tgaccagttt aaagaagaca tagagacaga      6360
     cacagacatt gagagtacag aggacgaaga cgacgaagcg gacaggtttg atatcataga      6420
     cacttctgat gaagaagatg gaaatgagac agaccgtgta accctcctct caactctcgt      6480
     aaatcaagga atgacaatga cgcgtgccac aaggatagca cggcgcgcat tccccacgct      6540
     ttccgatagg atcaagcgtg gagtatacat ggacctgctt gtctcggggg taagcccagg      6600
     caatgcatgg tctcatgcgt gtgaagaggc acgcaaagca gtaggggaaa ccaatccctg      6660
     cacatctgga agccgcggcc acgccgagta ggaacgaggg tacagcttcc ttcttttctg      6720
     tctctgttta gattatttta atcaccattt aaaattgatt taatcagaag c               6771

From 

Lewis, T.L., Greenberg, H.B., Herrmann, J.E., Smith, L.S. and Matsui, S.M. (1994). Analysis of astrovirus serotype 1 
RNA, identification of the viral RNA-dependent RNA polymerase motif, and expression of a viral structural protein. 
J. Virol. 68: 77-83.

http://www.iah.bbsrc.ac.uk/virus/Astroviridae/astrovirusdatabase.htm

 

Created by Gavin Williams
Human Biology 115A
Winter, 2002
Robert Siegel, instructor