Serotype 2 (Oxford strain)

 Back Up Next
    
 
     ccaagagggg ggtggtgatt ggcctttggc ttatcagtgt gtatataaga tttctacact        60
     cttttatcaa gtactctaca ggatggcaca cggtgagcca tactacagtt ctaaacctga       120
     caaagatttc aattttggaa gcacaatggc acgtaggcaa atgacaccta ccatggttac       180
     aaagcttccc aagtttgtta ggaattctcc acaagcctat gattggatcg taagaggtct       240
     aatcttcccc accactggaa aaacttattt ccaacgagtt gttgtgatta ccggtgggct       300
     tgaggatgga acatatggct cattcgcatt tgatggtaga gaatgggtag agatctaccc       360
     aatagagcat ctaaatctca tgtcatcttt gaaactaata cacaaagcca atgctcttca       420
     ggagagatta cgtctctccc aagaagagaa agccaccctt gctcttgatg tgcaattcct       480
     tcagcatgaa aacgtgcgac tgaaggaatt gattccaaaa ccagagccac ggaagataca       540
     gatgaagtgg ataattgtag gagcagtgct tacattttta tctctaatac ctgggggcta       600
     tgcgcaaagt cagaccaaca acactatatt tacagatgtg atagctgcct gcaaatattc       660
     aactgagaca ttaacagaaa accttgacct tagaatcaag ctcgcactag caaacataac       720
     cattagtgac aagttagacg ctgtgaggca aattcttaac tttgcctttg tacctagagc       780
     tcattggttg agaactgttt tctactacat ccattattat gaaatgtgga atatttttat       840
     gtttgttctt gcaattggca ctgtcatgag gagcgcccgc cccggtacag acttaatcac       900
     acttgcaacg tcccacttgt ctggttttag gctggctgtt ttacccacaa ttccattcca       960
     taccactatg actttgtggg tcatgaacac tcttatggtt tgttactatt ttgataattt      1020
     gctagcaata acaatggcaa tcttagcacc aatccttggc atcatcttct tgtgcttcat      1080
     ggaagactcc aattatgtga gccagatacg tggtcttatt gccacagcaa tattaattgc      1140
     tggtgggcat gcctgtttga cactcacagg cacaaccacg tcattatttg ctgtcatact      1200
     aacttgtagg ttcatacgta tggcgacggt ttttattggc accagattcg agatccgtga      1260
     tgctaatggg aaggtcgtgg ctactgtacc aactaggatc aaaaatgttg catttgactt      1320
     cttccagaag ctaaaacagt caggggtgag agttggagtc aacgaattcg ttgttataaa      1380
     accaggtgca ttatgtgtca tagacacccc tgaagggaaa ggaacaggtt tcttttctgg      1440
     caatgacata gtaacagcag cacatgttgt tggcaataat acttttgtga atgtgtgcta      1500
     cgagggcttg atgtacgaag cgaaagttcg ttacatgcct gaaaaggaca tagcattcat      1560
     aacttgtcct ggtgacttgc atccaacagc aagattaaaa ttatcaaaga acccagatta      1620
     tagttatgtc acagtcatgg cttacgtgaa tgaagatctt gtggtttcaa ccgcagctgc      1680
     catggtgcat ggtaacactc tctcatatgc agttcgcacc caagacggga tgtcgggtgc      1740
     accagtttgt gacaagtatg gtcgggtgtt ggcagtccat caaaccaata ctgggtacac      1800
     tggaggtgct gtcataatag acccagcaga ctttcatcca gtgaaggccc catctcaggt      1860
     ggaattgctc aaagaggaaa tagagcgact aaaagcccaa ttgaattccg ccgctgagaa      1920
     cccagcgact gttgctacac aacaacctgc cattacatta gaacagaaaa gtgttagcga      1980
     cagtgatgtt gttgaccttg tcagaactgc aatggaacgt gagatgaagg tactgcgtga      2040
     tgaaatcaat gggatacttg caccatttct acaaaaaaag aaaggtaaga ccaagcatgg      2100
     taggggtaga gtcagacgta accttagaaa aggcgtgaaa ctccttactg aggaagagta      2160
     tcgagaactc ttagagaaag gtctagatcg tgagacattc cttgacctta tagaccgcat      2220
     tattggagag aggtctggct accctgacta tgatgatgag gattattatg atgaagatga      2280
     tgatggatgg ggaatggttg gtgatgatgt agaatttgat tatactgaag taattaattt      2340
     tgaccaagca aaaccaactc ctgccccaag aacaaccaag ccaaaacctt gccccgagcc      2400
     agaaactgaa acacaaccac ttgatttgtc tcagaagaaa gagaaacaac cagaacatga      2460
     acaacaagtg gtgaagtcta ccaagcctca gaagaatgaa cctcagccat attcacaaac      2520
     ttatggcaag gcaccaatct gggaatctta tgattttgac tgggacgagg atgatgccaa      2580
     gttcatcctg ccagcaccac accggttaac taaggcagat gaaatagttc ttgggtcaaa      2640
     aattgtcaag cttaggacga ttattgaaac agccattaag acccagaact atagtgcact      2700
     acctgaagct gtgtttgagc tcgacaaagc agcttatgaa gcaggtctag aaggtttcct      2760
     ccaaagagtt aaatcgaaaa acaaggcccc aaaaaactac aaagggcccc agaagaccaa      2820
     ggggcccaaa attatcactc attagatgca tggaaatcat tgctagaacc tccacgtgag      2880
     cggaggtgcg tacctgctaa ttttccattg ttaggtcatt taccaattaa tagacccatc      2940
     tttgatgata agaaacccag ggatgatctc cttggattac ttccagaacc aacctggcat      3000
     gcttttgagg aatatggacc aactacatgg ggcccacaag ctttcattaa gtcttttgat      3060
     aaattctttt atgcagaacc aattgatttt ttttcagaat atccacagtt gtgtgctttc      3120
     gctgattggg caacttatcg cgagtttcgg tatctagagg acactagagt gatacacata      3180
     actgcaactg agaagaatac tgattcaaca cctgcatatc ctaaaatgaa ttattttgat      3240
     actgaagaaa gttatttgga agcacatggg tgggctccat atattagaga attcactagg      3300
     gtcttcaaag gagacaaacc tgaagtactg tggtacctat ttcttaagaa agagatcatt      3360
     aaggaggaaa aagttaaaaa ttctgatatc cggcagatag tatgtgccga tcccatttac      3420
     accaggatag gggcgtgctt agaggcacat cagaatgctt tgatgaaaca gcataccgat      3480
     acttcagttg gtcagtgtgg gtggtcacca atggaaggcg gctttaaaaa aacaatgcaa      3540
     cgcctagtaa ataaagggaa taagtacttt attgaatttg actggacccg ctatgatgga      3600
     actataccac cagcactttt caaacacatc aaagaaatta ggtggaattt catcaataaa      3660
     gaccaacgtg aaaagtacag acatgtgcat gactggtatg ttgacaacct ccttaaccgc      3720
     catgtacttc taccatctgg tgaagttacc ttgcagacac gaggcaatcc atctgggcag      3780
     ttttcaacaa caatggataa taacatggtc aatttttggc tacaagcttt tgagttcgct      3840
     tatttcaatg gcccagacaa agacctttgg aagacctatg acactgtggt ttatggagat      3900
     gacaggctct ctacaacacc ttcggtacct gatgattatg aggagagagt gatcactatg      3960
     tatagagaca tctttggcat gtgggttaag cccgggaagg tcatctgtag aaacagcata      4020
     gttggattat ccttttgtgg ctttactgtt aatgaaaatc ttgaacctgt gccaacctct      4080
     ccggaaaagt tgatggcatc actgctaaag ccttataaag ttttacctga tcttgaatca      4140
     ctccatggga agctcctatg ctatcagttg cttgctgcgt tcatggcaga agatcaccct      4200
     tttaaggtgt atatagaaca ctgcctatca cggactgcaa agcagcttcg tgactctggc      4260
     ctaccggcca ggctcacaga agagcaactc catcgcattt ggaggggagg accaaagaag      4320
     tgtgatggct agcaagtctg acaagcaagt cactgttgag gtcaataaca atggccgaaa      4380
     caggagcaaa tccagagctc gatcacaatc tagaggtcga ggtagatcag tcaaaatcac      4440
     agtcaattct cacaacaaag gcagaagaca aaacggacgc aacaaatatc aatctaatca      4500
     gcgtgtccgt aaaattgtca ataaacaact caggaaacag ggtgtcacag gaccaaaacc      4560
     tgcaatatgc cagagagcca cagcaacact tgggacaatt ggatcaaaca caacaggagc      4620
     aacagagatc gaggcgtgca tactccttaa tcccgtcctg gttaaggacg ctactggaag      4680
     tactcagttt gggccagtgc aggcgctagg tgctcagtat tcaatgtgga aactaaagta      4740
     tttgaatgtt aaactgactt ccatggtggg cgcctcagct gttaacggga ctgtactccg      4800
     catctcgctc aaccctacat ccactccatc atcaactagc tggtctggac ttggtgctcg      4860
     taagcacatg gatgttacag tgggcaggaa tgcagtcttt aaacttagac catcagacct      4920
     tggagggcca agggatggct ggtggctcac taataccaat gacaatgcat ctgatacatt      4980
     aggcccatct attgaaattc acacccttgg taaaaccatg tcttcatata aaaatgagca      5040
     atttacaggt ggactatttc ttgttgagct tgcttcagaa tggtgtttta ctggctatgc      5100
     agctaatcca aatttagtta atttggttaa atccactgat catgaggtga atgtcacttt      5160
     tgagggctca aaaggtacgc ccctaataat gaatgtcgca gagcacagcc actttgcaag      5220
     aatggctgaa caacattcct ccatctcaac aacattttca agagctggag gcgatgcaac      5280
     atctgacact gtttggcagg tgctgaacac agcagtctca gcagcagagc ttgtagcccc      5340
     accaccgttc aattggctta taaagggtgg ctggtggttt gtaaagttga ttgcaggtag      5400
     aactagaact ggtaccaagc aattttatgt ttatcctagt tatcaggatg ctttatcaaa      5460
     taaaccagct ctttgcactg gtggagttac aggtggcgtt ctacgtacca caccggtaac      5520
     aactctacag ttcactcaaa tgaaccagcc aagccttggg catggtgagc acactgccac      5580
     cattggcagt attgtgcaag atccaagtgg ggaactgcgt gtgctgctaa cagttggctc      5640
     aatcatgagc ccgaattcag ctgataggca agtttggctg aacaaaactc tgacagcgcc      5700
     aggaacaaat tcaaatgaca atcttgtaaa gatagcccac gacttgggtc actatttgat      5760
     catgcaaggg tttatgcata taaagacagt agagtggtat actcctgatt ttcaaccttc      5820
     gcgtgaccca acccctattg ctggcatgtc agtgatggtt aacataacaa agaaggctga      5880
     tgtctacttc atgaagcaat tcaaaaattc ttacaccaac aaccgccatc aaataacaag      5940
     catcttttta attaaaccat tggcagattt taaggtgcaa tgttatatga gctactttaa      6000
     aagagagtca catgacaatg atggggttgc caatcttaca gtgagaagta tgaccagccc      6060
     ggagactatc aggtttcaag ttggagaatg gtatttgcta acaagtacca cacttaagga      6120
     gaacaaccta ccagagggct gggtttggga tagggtggag cttaagagtg acacaccata      6180
     ctatgctgat caagcattga catatttcat aacaccaccc ccagtggact cccaaatttt      6240
     atttgaaggt aacaccacat tgcccagaat ttcctctccg cctgacaatc ccagcgggcg      6300
     atatatggaa agccaccagc aagactgtga ctcttctgat gatgaggatg attgtgaaaa      6360
     tgtttcagag gagacagaaa ctgaggatga ggaagatgag gacgaagacg atgaagcgga      6420
     caggtttgat ctccacagcc cctatagttc tgaacctgag gactctgatg agaacaaccg      6480
     tgtaaccctc ctctctacac tcataaacca aggaatgaca gtggagcgcg caacaagaat      6540
     aactaaacgc gctttcccaa cctgcgctga gaaactgaag cgcagcgtgt acatggacct      6600
     gcttgcctcc ggtgcatcgc cgagcagtgc atggtcaaac gcgtgtgatg aagcacgcaa      6660
     tgtgggcagc aatcagctgg ccaaactttc tggagaccgc ggccacgccg agtaggatcg      6720
     agggtacagt ctccattact tttctgtctc tgtttagatt attttaatca ccatttaaaa      6780
     ttgatttaat cagaagcaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa                   6828

From:

Jiang, B., Monroe, S.S., Koonin, E.V., Stine, S.E. and Glass R.I. (1993) RNA sequence of astrovirus: distinctive 
genomic organization and a putative retrovirus-like ribosomal frameshifting signal that directs the viral replicase 
synthesis. Proc. Natl. Acad. Sci. U.S.A. 90: 10539-10543.

http://www.iah.bbsrc.ac.uk/virus/Astroviridae/astrovirusdatabase.htm

 

Created by Gavin Williams
Human Biology 115A
Winter, 2002
Robert Siegel, instructor