Tissue Microarray

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© 2002-10
by Chih Long Liu

Publications

Number of publications: 21
Publications with first authorship: 9

    (Shown in reverse chronological order)

  • Radman-Livadja M*, Liu CL*, Friedman N, Schreiber SL, Rando OJ.
    Replication and Active Demethylation Represent Partially Overlapping Mechanisms for Erasure of H3K4me3 in Budding Yeast.
    PLoS Genetics February 2010, Vol. 6, No. 2, e1000837.
    Pubmed PLoS Genetics

  • Richez C, Yasuda K, Bonegio RG, Watkins AA, Aprahamian T, Busto P, Richards RJ,Liu CL, Cheung R, Utz PJ, Marshak-Rothstein A, Rifkin IR.
    IFN Regulatory Factor 5 Is Required for Disease Development in the Fc{gamma}RIIB/Yaa and Fc{gamma}RIIB/ Mouse Models of Systemic Lupus Erythematosus
    Journal of Immunology January 15, 2010, Vol. 184, No. 2, pp. 796-806.
    Pubmed Journal of Immunology

  • Bua DJ*, Kuo AJ*, Cheung P*, Liu CL, Migliori V, Espejo A, Casadio F, Bassi C, Amati B, Bedford MT, Guccione E, and Gozani O. Epigenome microarray platform for proteome-wide dissection of chromatin-signaling networks.
    PLoS One August 26, 2009, Vol. 4, No. 8, e6789.
    Pubmed PLoS One

  • Kaplan T*, Liu CL*, Erkmann JA*, Holik J, Grunstein M, Kaufman PD, Friedman N, Rando OJ.
    Cell cycle- and chaperone-mediated regulation of H3K56ac incorporation in yeast.
    PLoS Genetics November 2008, Vol. 4, No. 11, e1000270.
    Pubmed PLoS Genetics

  • Liu CL, Montgomery KD, Natkunam Y, West RB, Nielsen TO, Cheang MC, Turbin DA, Marinelli RJ, van de Rijn M, Higgins JP.
    TMA-Combiner, a simple software tool to permit analysis of replicate cores on tissue microarrays
    Modern Pathology December 2005, Vol. 18, No, 12, pp. 1641-1648.
    Pubmed Modern Pathology Web Supplement

  • Raisner RM, Hartley PD, Meneghini MD, Bao MZ, Liu CL, Schreiber SL, Rando OJ, and Madhani HD.
    Histone Variant H2A.Z Marks the 5' Ends of Both Active and Inactive Genes in Euchromatin.
    Cell Oct 21 2005, Vol. 123, No. 2, pp. 233-48.
    Pubmed Cell Supplement

  • Liu CL*, Kaplan T*, Kim M, Buratowski S, Schreiber SL, Friedman N, Rando OJ
    Single-Nucleosome Mapping of Histone Modifications in S. cerevisiae
    PLoS Biology October 2005, Vol. 3, Issue 10, article e328.
    Pubmed PLoS Biology Web Supplement

  • Liu CL, Bernstein BE, and Schreiber SL.
    DNA Linear Amplification. Whole Genome Amplification: Methods Express. October 2005, Scion Publishing, Bloxham, UK, Chapter 7, pp. 77-98.
      Methods Express Web Supplement

  • Bernstein BE, Liu CL, Humphrey EL, Perlstein EO, Schreiber SL.
    Global nucleosome occupancy in yeast.
    Genome Biology 2004, Vol. 5, Article R62.
    Pubmed Genome Biology Web Supplement

  • West RB, Harvell J, Linn SC, Liu CL, Prapong W, Hernandez-Boussard T, Montgomery K, Nielsen TO, Rubin BP, Patel R, Goldblum JR, Brown PO, van de Rijn M.
    Apo D in Soft Tissue Tumors: A Novel Marker for Dermatofibrosarcoma Protuberans.
    American Journal of Surgical Pathology August 2004, Vol. 28 No. 8, pp. 1063-9.
    Pubmed Am J Surg Pathol Web Supplement

  • Bernstein BE, Humphrey EL, Liu CL, Schreiber SL.
    The use of chromatin immunoprecipitation assays in genome-wide analyses of histone modifications.
    Methods in Enzymology 2004, Vol. 376, pp. 349-360.
    Pubmed

  • Nielsen TO, Hsu FD, O'Connell JX, Gilks CB, Sorensen PH, Linn S, West RB, Liu CL, Botstein D, Brown PO, van de Rijn M.
    Tissue microarray validation of epidermal growth factor receptor and SALL2 in synovial sarcoma with comparison to tumors of similar histology.
    American Journal of Pathology October 2003, Vol. 163, No. 4, pp. 1449-1456.
    Pubmed Am J Path Web Supplement

  • Liu CL, Schreiber SL, Bernstein BE.
    Development and validation of a T7 based linear amplification for genomic DNA
    BMC Genomics 2003 May 9, 4:19.
    Pubmed BMC Genomics Web Supplement

  • Arava Y, Wang Y, Storey JD, Liu CL, Brown PO, Herschlag D.
    Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae.
    PNAS 2003 Apr. 1, 100(7): 3889-94.
    Pubmed PNAS Web Supplement

  • Alkushi A, Irving J, Hsu F, Dupuis B, Liu CL, van de Rijn M, Gilks CB.
    Immunoprofile of Cervical and Endometrial Adenocarcinomas Using a Tissue Microarray
    Virchows Archiv March 2003, Vol. 442(3): pp. 271-277.
    Pubmed Virchows Archiv (no web supplement)

  • Forrest D. Hsu, M.Sc., Torsten O. Nielsen, M.D., Abdulmohsen Alkushi, M.D., Bev Dupuis, R.T., David Huntsman, M.D., Chih Long Liu, B.Sc., Matt van de Rijn, M.D. and C. Blake Gilks, M.D.
    Tissue Microarrays Are an Effective Quality Assurance Tool for Diagnostic Immunohistochemistry
    Modern Pathology Dec. 2002, Vol. 15(12): pp. 1374-1380.
    Pubmed Modern Pathology (no web supplement)

  • Liu C, Prapong W, Natkunam Y, Alizadeh AA, Montgomery K, Gilks CB, van de Rijn M (2002).
    Software Tools for High-throughput Analysis and Archiving of Immunohistochemistry Staining Data Obtained with Tissue Microarrays
    American Journal of Pathology Nov. 2002, Vol. 161, No. 5, pp. 1557-1565.
    This paper appeared on the cover of that month's issue.
    Note: a small blurb about this work appeared in The Scientist (Perkel, J, "Tissue Microarrays, Advancing Clinical Genomics", 28 Oct. 2002, Vol. 39, No. 21, p. 39).
    Pubmed Am J Path Web Supplement

  • Chih Long Liu. Recovery of Unincorporated Cy Dyes: Repurification by HPLC
    DNA Microarrays, A Cloning Manual (2002), CSHL Press, Cold Spring Harbor, New York, pp. 223-227.
    Book Manual Info

  • Diehn M*, Alizadeh AA*, Rando OJ*, Liu CL*, Stankunas K, Botstein D, Crabtree GR, Brown PO (2002).
    Genomic Expression Programs and the Integration of the CD28 Costimulatory Signal in T-Cell Activation.
    PNAS, 2002 Sept 3; 99(18): 11796-11801.
    Pubmed PNAS Web Supplement

  • Wang Y, Liu CL, Storey JD, Tibshirani RJ, Herschlag D, Brown PO.
    Precision and functional specificity in mRNA decay.
    PNAS 2002 Apr 30; 99(9): 5860-5865.
    Pubmed PNAS Web Supplement

  • Boldrick JC, Alizadeh AA, Diehn M, Dudoit S, Liu CL, Belcher CE, Botstein D, Staudt LM, Brown PO, Relman DA.
    Stereotyped and specific gene expression programs in human innate immune responses to bacteria.
    PNAS 2002 Jan 22; 99(2): 972-977.
    Pubmed PNAS Web Supplement

* These authors contributed equally to this work.
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Last edited by Chih Long Liu on February 26, 2010