Publications

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Peer-Reviewed Journal Articles

  1. Boles, E.L., J.S. Rogers, R.F. da Silva, & S.G. Monismith (2026), Phase-resolved modeling of wave transformation over periodic spur and groove bathymetry on coral reefs. Coastal Engineering, 209.
    doi:10.1016/j.coastaleng.2026.105032
  2. Tan, S., J.S. Rogers, O.B. Fringer, G. Pawlak, K. Okun, & K.A. Davis (2026), Energetics of nonlinear internal waves interacting with a conical island. Journal of Geophysical Research: Oceans, 131, e2025JC023684.
    doi:10.1029/2025JC023684
  3. Rogers, J.S., W. Zhang, N. Mollica, M. Fox, & A. Cohen (2026), Interacting effects of sea-level rise and ocean warming reshape thermal environments on a coral reef. Geophysical Research Letters, 53.
    doi:10.1029/2025GL120406
  4. Rogers, J.S., S. Tan, K.A. Davis, G. Pawlak, & O.B. Fringer (2025), Climate-driven stratification intensifies internal wave cooling on a shallow island reef. Geophysical Research Letters, 52, e2025GL115458.
    doi:10.1029/2025GL115458
  5. Rogers, J.S., M. Maneta, S. Sain, L. Madaus, & J. Hacker (2025), The role of climate and population change in global flood exposure and vulnerability. Nature Communications, 16.
    doi:10.1038/s41467-025-56654-8
  6. Monismith, S.G., S.A. Maticka, J.S. Rogers, B. Hefner, & C.B. Woodson (2024), Vertical structure of flows on a shallow reef flat: a coral reef surf zone. Coastal Engineering, 190.
    doi:10.1016/j.coastaleng.2024.104499
  7. Maticka, S.A., J.S. Rogers, C.B. Woodson, B. Hefner, & S.G. Monismith (2022), Reef flat flow dynamics for a nearly closed fringing reef-lagoon: Ofu, American Samoa. Journal of Geophysical Research: Oceans, 127.
    doi:10.1029/2022JC018831
  8. Rogers, J.S., F. Mayer, K.A. Davis, & O.B. Fringer (2022), On internal tides driving residual currents and upwelling on an island. Journal of Geophysical Research: Oceans, 127.
    doi:10.1029/2021JC018261
  9. Hao, X., J. Wu, J.S. Rogers, O.B. Fringer, & L. Shen (2022), A high-order spectral method for effective simulation of surface waves interacting with a strongly nonlinear internal wave. Ocean Modelling.
    doi:10.1016/j.ocemod.2022.101996
  10. Guillaume-Castel, R., G.J. Williams, J.S. Rogers, J.M. Gove, & J.A.M. Green (2021), Quantifying upwelling in tropical shallow waters: a novel method using a temperature stratification index. Limnology and Oceanography: Methods, 19(8), 566–577.
    doi:10.1002/lom3.10449
  11. Lindhart, M., J.S. Rogers, S.A. Maticka, C.B. Woodson, & S.G. Monismith (2021), Wave modulation of flows on open and closed reefs. Journal of Geophysical Research: Oceans, 126(4), e2020JC016645.
    doi:10.1029/2020JC016645
  12. da Silva, R.F., C.D. Storlazzi, J.S. Rogers, J. Reyns, & R. McCall (2020), Modeling three-dimensional flow over spur-and-groove morphology. Coral Reefs, 39, 1841–1858.
    doi:10.1007/s00338-020-02011-8
  13. Davis, K.A., R.S. Arthur, E.C. Reid, J.S. Rogers, O.B. Fringer, T.M. DeCarlo, & A.L. Cohen (2020), Fate of internal waves on a shallow shelf. Journal of Geophysical Research: Oceans, 125.
    doi:10.1029/2019JC015377
  14. Hefner, B.B., J.S. Rogers, S.A. Maticka, S.G. Monismith, & C.B. Woodson (2019), Instrumentation for direct measurements of wave-driven flow over a fringing reef crest. Limnology and Oceanography: Methods, 17, 627–638.
    doi:10.1002/lom3.10337
  15. Rogers, J.S., M. Rayson, D. Ko, K. Winters, & O.B. Fringer (2019), A framework for seamless one-way nesting of internal wave-resolving ocean models. Ocean Modelling, 143, 101462.
    doi:10.1016/j.ocemod.2019.101462
  16. Rogers, J.S., S.A. Maticka, V. Chirayath, C.B. Woodson, J.J. Alonso, & S.G. Monismith (2018), Connecting flow over complex terrain to hydrodynamic roughness on a coral reef. Journal of Physical Oceanography, 48, 1567–1587.
    doi:10.1175/JPO-D-18-0013.1
  17. Safaie, A., N.J. Silbiger, T.R. McClanahan, G. Pawlak, D.J. Barshis, J.L. Hench, J.S. Rogers, G.J. Williams, & K.A. Davis (2018), High-frequency temperature variability reduces the risk of coral bleaching. Nature Communications, 9.
    doi:10.1038/s41467-018-04074-2
  18. Williams, G.J., S.A. Sandin, B.J. Zgliczynski, M.D. Fox, J.M. Gove, J.S. Rogers, K.A. Furby, A.C. Hartmann, Z.R. Caldwell, N.N. Price, & J.E. Smith (2018), Biophysical drivers of coral trophic depth zonation. Marine Biology, 165.
    doi:10.1007/s00227-018-3314-2
  19. Rogers, J.S., S.G. Monismith, D.A. Koweek, & O.B. Fringer (2017), A coupled wave-hydrodynamic model of an atoll with high friction: mechanisms for flow, ecological implications, and connectivity. Ocean Modelling, 110, 66–82.
    doi:10.1016/j.ocemod.2016.12.012
  20. Rogers, J.S., S.G. Monismith, D.A. Koweek, W. Torres, & R.B. Dunbar (2016), Thermodynamics and hydrodynamics in an atoll reef system and their influence on coral cover. Limnology and Oceanography, 61, 2191–2206.
    doi:10.1002/lno.10365
  21. Rogers, J.S., S.G. Monismith, D.A. Koweek, & R.B. Dunbar (2016), Wave dynamics of a Pacific atoll with high frictional effects. Journal of Geophysical Research: Oceans, 121, 350–367.
    doi:10.1002/2015JC011170
  22. Monismith, S.G., J.S. Rogers, D.A. Koweek, & R.B. Dunbar (2015), Frictional wave dissipation on a remarkably rough reef. Geophysical Research Letters, 42, 4063–4071.
    doi:10.1002/2015GL063804
  23. Rogers, J.S., S.G. Monismith, R.B. Dunbar, & D.A. Koweek (2015), Field observations of wave-induced circulation over spur and groove formations on a coral reef. Journal of Geophysical Research: Oceans, 120, 145–160.
    doi:10.1002/2014JC010464
  24. Koweek, D.A., R.B. Dunbar, J.S. Rogers, G.J. Williams, D.A. Mucciarone, & L.T. Teneva (2015), Environmental and ecological controls of coral community metabolism on Palmyra Atoll. Coral Reefs, 34, 339–351.
    doi:10.1007/s00338-014-1217-3
  25. Rogers, J.S., S.G. Monismith, F. Feddersen, & C.D. Storlazzi (2013), Hydrodynamics of spur and groove formations on a coral reef. Journal of Geophysical Research: Oceans, 118, 3059–3073.
    doi:10.1002/jgrc.20225
  26. Rogers, J.S., K.W. Potter, A.R. Hoffman, J.A. Hoopes, C.H. Wu, & D.E. Armstrong (2009), Hydrologic and water quality functions of a disturbed wetland in an agricultural setting. Journal of the American Water Resources Association, 45(3), 628–640.
    doi:10.1111/j.1752-1688.2009.00311.x

Proceedings & Other Publications

  1. Rogers, J.S. (2015), Physical oceanography in coral reef environments: wave and mean flow dynamics at small and large scales, and resulting ecological implications. PhD Thesis, Stanford University.
  2. Elmer, F., J.S. Rogers, R.B. Dunbar, S.G. Monismith, J.J. Bell, J.P. Gardner (2016), Influence of localised currents, benthic cover and composition on Pocilloporid and Poritid recruitment rates. Proceedings of the 13th International Coral Reef Symposium (ICRS'16).
  3. Rogers, J.S. and C.H. Wu (2007), Hydrology, hydrodynamics and sediment transport investigation in a small wetland. ASCE World Environmental and Water Resources Congress: Restoring Our Natural Habitat.
    doi:10.1061/40927(243)625
  4. Rogers, J.S. (2006), Hydrologic and water quality characteristics of a small wetland. MS Thesis, University of Wisconsin–Madison.