Table 2: Results of PRISM Searches of Upstream 600 bp of 41, 37, and 28 ORFs that are Correlated in Gene Expression Pattern to HXT2. Motif Positions Upstream of Start Codon are Indicated.
| PRISM search with 41 upstream regions | PRISM Search with 37 upstream regions | PRISM Search with 37 upstream regions | PRISM Search with 37 upstream regions | PRISM search with 28 upstream regions | PRISM search with 28 upstream regions | ||
| motif 1 | motif 1 | motif 2 | motif 20 | motif 1 | motif 2 | ||
| motif length | 559 | 460 | 339 | 8 | 13 | 6 | |
| YDL171c | -345, -322 | GLT1 glutamate synthase (NAPDPH) (GOGAT) | |||||
| YMR011w | -542, -386, -497, -69, -83 | -147 | HXT2 high-affinity hexose transporter | ||||
| YDR345c | -473 | -463 | HXT3 low-affinity hexose transporter | ||||
| YML133c | -856, -788 | -145 | -610 | -190, -187 | not included | not included | hypothetical protein Y'.2 |
| YLR150w | -517, -177, -514, -173, -222 | -268 | MPT4 specific affinity for guanine-rich quadruplex nucleic acids | ||||
| YLR048w | NAB1B 40S ribosomal protein p40 homolog B | ||||||
| YHR219w | -1044 | not included | not included | not included | not included | not included | putative pseudogene |
| YBR232c | -235 | -60, -492 | questionable ORF | ||||
| YLR280c | -84 | -549, -574, -540, -306 | -388, -296 | questionable ORF | |||
| YLR339c | -171 | questionable ORF | |||||
| YIL052c | not included | not included | not included | -446, -254, -334 | -182 | ribosomal protein L34.e | |
| YOR293w | -231 | -586 | ribosomal protein S10.e | ||||
| YPL131w | -557 | -51 | RPL1 ribosomal protein L5.e | ||||
| YGR034w | RPL33B ribosomal protein L26 | ||||||
| YHL033c | -312 | RPL4A ribosomal protein L7a.e.A | |||||
| YIL018w | not included | not included | not included | -520 | RPL5A ribosomal protein L8.e | ||
| YPL198w | -411, -91, -330, -59 | RPL6B ribosomal protein | |||||
| YPL090c | -126 | -378, -362 | RPS10B ribosomal protein S6.e | ||||
| YGL189c | -184 | RPS26A 40S ribosomal protein S26e.c7 | |||||
| YER131w | -52 | RPS26B ribosomal protein S26e-c5 | |||||
| YER102w | -477, -161 | RPS8B ribosomal protein S8.e | |||||
| YAR020c | -63, -437, -321 | -237 | similarity to members of the srp1p/Tip1p family | ||||
| YDL047w | -109, -88 | SIT4 ser/thr protein phosphatase | |||||
| YPL220w | SSM1 ribosomal protein | ||||||
| YER056c-a | -570 | -133, -412 | strong similarity to mammalian ribosomal l34 proteins | ||||
| YJL225c | -862, -794 | not included | not included | not included | not included | not included | strong similarity to members of the Sir1p/Tip1p family |
| YEL077c | -342 | not included | not included | strong similarity to subtelomeric encoded proteins | |||
| YER190w | -470 | -481 | -496 | not included | not included | strong similarity to subtelomeric encoded proteins | |
| YGR296w | -522 | -276 | not included | not included | strong similarity to subtelomeric encoded proteins | ||
| YIL177c | -862, -794 | -145 | -616 | -185, -182 | not included | not included | strong similarity to subtelomeric encoded proteins |
| YLL066c | -652, -129 | -663 | not incuded | not incuded | strong similarity to subtelomeric encoded proteins | ||
| YLL067c | -652, -129 | -663 | not incuded | not incuded | strong similarity to subtelomeric encoded proteins | ||
| YLR466w | not included | not included | strong similarity to subtelomeric encoded proteins | ||||
| YLR467w | -857, -789 | -145 | -611 | -190, -187 | not included | not included | strong similarity to subtelomeric encoded proteins |
| YPL283c | -522 | -276 | not included | not included | strong similarity to subtelomeric encoded proteins | ||
| YIL148w | -240, -237 | -503 | UBI1 ubiquitin | ||||
| YFL068w | weak similarity to hypothetical E.coli protein | ||||||
| YKR083c | -513 | -486 | weak similarity to S.japonicum paramyosin | ||||
| YML101c | -310 | weak similarity to YMR264w | |||||
| YBL113c | -1044 | -290 | not included | not included | Y' short ORF no intron | ||
| YKL199c | -604 | -415 | YKT9 PTK1-YKT9 overlapping sequences may arise from a gene duplication event involving chromosomes X and XI |