March 28, Monday: Tom Dean, Introductory Remarks, Google Research
(TALK)
March 30, Wednesday: Tom Dean, Scalable Neuroscience, Google Research
(TALK)
April 4, Monday: Saul Kato, Institute for Molecular Pathology
(TALK) [RELATES TO SUGGESTED PROJECT ♯1]
April 6, Wednesday: Tom Dean, Project Discussions, Google Research
(TALK)
April 11, Monday: David Sussillo, Google Brain Group
(TALK)
April 13, Wednesday: Jeremy Freeman, HHMI Janelia Farm
(TALK)
April 18, Monday: Eric Jonas, UC Berkeley AMP Lab
(TALK) [RELATES TO SUGGESTED PROJECT ♯2]
April 20, Wednesday: Andrew Leifer, Princeton University
(TALK) [RELATES TO SUGGESTED PROJECT ♯1]
April 25, Monday: Pawel Dlotko, INRIA Research Center, Saclay
(TALK) [RELATES TO SUGGESTED PROJECT ♯3]
April 27, Wednesday: Matthew Kaufman, Cold Spring Harbor Laboratory
(TALK)
May 2, Monday: Tom Dean, Project Discussions, Google Research
(TALK)
May 4, Wednesday: Steven Esser, IBM Almaden Research Center
(TALK)
May 9, Monday: Costas Anastassiou, Allen Institute for Brain Science
(TALK) [RELATES TO SUGGESTED PROJECT ♯3]
May 11, Wednesday: Ed Boyden, Massachusetts Institute of Technology
(TALK)
May 16, Monday: Wei-Chung Lee, Harvard University
(TALK) [RELATES TO SUGGESTED PROJECT ♯2]
May 18, Wednesday: Adam Marblestone, Massachusetts Institute of Technology
(TALK)
May 23, Monday: TBD
(TALK)
May 25, Wednesday: Peter Latham, Gatsby Computational Neuroscience Unit
(TALK)
May 30, Monday: Memorial Day (no classes)
June 1, Wednesday: TBD
(TALK)
| [1] |
A. Paul Alivisatos, Anne M. Andrews, Edward S. Boyden, Miyoung Chun, George M.
Church, Karl Deisseroth, John P. Donoghue, Scott E. Fraser, Jennifer
Lippincott-Schwartz, Loren L. Looger, Sotiris Masmanidis, Paul L. McEuen,
Arto V. Nurmikko, Hongkun Park, Darcy S. Peterka, Clay Reid, Michael L.
Roukes, Axel Scherer, Mark Schnitzer, Terrence J. Sejnowski, Kenneth L.
Shepard, Doris Tsao, Gina Turrigiano, Paul S. Weiss, Chris Xu, Rafael Yuste,
and Xiaowei Zhuang.
Nanotools for neuroscience and brain activity mapping.
ACS Nano, 7(3):1850–1866, 2013.
|
| [2] |
A. Paul Alivisatos, Miyoung Chun, George M. Church, Ralph J. Greenspan,
Michael L. Roukes, and Rafael Yuste.
The brain activity map project and the challenge of functional
connectomics.
Neuron, 74, 2012.
|
| [3] |
Rajagopal Ananthanarayanan, Steven K. Esser, Horst D. Simon, and Dharmendra S.
Modha.
The cat is out of the bag: cortical simulations with 109 neurons,
1013 synapses.
In Proceedings of the Conference on High Performance Computing
Networking, Storage and Analysis, pages 63:1–63:12, 2009.
|
| [4] |
R.P.J. Barretto and M.J. Schnitzer.
In vivo optical microendoscopy for imaging cells lying deep within
live tissue.
Cold Spring Harbor Protocols, 2012(10), 2012.
|
| [5] |
K.L. Briggman and D.D. Bock.
Current opinion neurobiology.
Volume electron microscopy for neuronal circuit reconstruction,
22:154–61, 2012.
|
| [6] |
K.L. Briggman, M. Helmstaedter, and W. Denk.
Wiring specificity in the direction-selectivity circuit of the
retina.
Nature, 471:183–188, 2011.
|
| [7] |
E.M. Callaway.
Transneuronal circuit tracing with neurotropic viruses.
Current Opinion Neurobiology, 18(6):617–23, 2008.
|
| [8] |
D. D. Cox, A. M. Papanastassiou, D. Oreper, B. B. Andken, and J. J. DiCarlo.
High-resolution three-dimensional microelectrode brain mapping using
stereo microfocal x-ray imaging.
Journal of Neurophysiology, 100(5):2966–2976, 2008.
|
| [9] |
James J. DiCarlo and David D. Cox.
Untangling invariant object recognition.
Trends in Cognitive Sciences, 11(8):333–341, 2007.
|
| [10] |
James J DiCarlo, Davide Zoccolan, and Nicole C Rust.
How does the brain solve visual object recognition?
Neuron, 73:415–34, 2012.
|
| [11] |
Michael Hawrylycz, Richard A. Baldock, Albert Burger, Tsutomu Hashikawa,
G. Allan Johnson, Maryann E. Martone, Lydia Ng, Christopher Lau, Stephen D.
Larson, Jonathan Nissanov, Luis Puelles, Seth Ruffins, Fons Verbeek, Ilya
Zaslavsky, and Jyl Boline.
Digital atlasing and standardization in the mouse brain.
PLoS Computational Biology, 7, 2011.
|
| [12] |
Heng Huang, Savas Delikanli, Hao Zeng, Denise M. Ferkey, and Arnd Pralle.
Remote control of ion channels and neurons through magnetic-field
heating of nanoparticles.
Nature Nanonotechnology, 5:602–606, 2010.
|
| [13] |
Eugene M. Izhikevich and Gerald M. Edelman.
Large-scale model of mammalian thalamo-cortical systems.
Proceedings of the National Academy of Science,
105(9):3593–3598, 2008.
|
| [14] |
Konrad Kording.
Of toasters and molecular ticker tapes.
PLoS Computational Biology, 7(12):e1002291, 2011.
|
| [15] |
Mo Li, W. H. P. Pernice, C. Xiong, T. Baehr-Jones, M. Hochberg, and H. X. Tang.
Harnessing optical forces in integrated photonic circuits.
Nature, 456:480–484, 2008.
|
| [16] |
Jesse D. Marshall and Mark J. Schnitzer.
Optical strategies for sensing neuronal voltage using quantum dots
and other semiconductor nanocrystals.
ACS Nano, 7:4601–4609, 2013.
|
| [17] |
J.H. Marshel, T. Mori, K.J. Nielsen, and E.M. Callaway.
Targeting single neuronal networks for gene expression and cell
labeling in vivo.
Neuron, 67(4):562–574, 2010.
|
| [18] |
Kristina D. Micheva and Stephen J. Smith.
Array tomography: A new tool for imaging the molecular architecture
and ultrastructure of neural circuits.
Neuron, 55(1):25–36, 2007.
|
| [19] |
Nancy A. O’Rourke, Nicholas C. Weiler, Kristina D. Micheva, and Stephen J.
Smith.
Deep molecular diversity of mammalian synapses: Why it matters and
how to measure it.
Nature Review Neuroscience, 10:365–379, 2012.
|
| [20] |
A.S. Sadek, R.B. Karabalin, J. Du, M.L. Roukes, C. Koch, and S.C. Masmanidis.
Wiring nanoscale biosensors with piezoelectric nanomechanical
resonators.
Nano Letters, 10:1769–1773, 2010.
|
| [21] |
Susan Sunkin, Lydia Ng, Christopher Lau, Tim Dolbeare, Terri L. Gilbert,
Carol L. Thompson, Michael Hawrylycz, and Chinh Dang.
Allen brain atlas: an integrated spatio-temporal portal for exploring
the central nervous system.
Nucleic Acids Research, 41:996–1008, 2013.
|
| [22] |
B.A. Wandell and J.D. Yeatman.
Biological development of reading circuits.
Current Opinion Neurobiology, 23:261–268, 2013.
|
| [23] |
Brian A. Wandell, Serge O. Dumoulin, and Alyssa A. Brewer.
Visual field maps in human cortex.
Neuron, 56(2):366–383, 2007.
|
| [24] |
Anthony M. Zador, Joshua Dubnau, Hassana K. Oyibo, Huiqing Zhan, Gang Cao, and
Ian D. Peikon.
Sequencing the connectome.
PLoS Biology, 10(10):e1001411, 2012.
|
| [25] |
Bradley Michael Zamft, Adam H. Marblestone, Konrad Kording, Daniel Schmidt,
Daniel Martin-Alarcon, Keith Tyo, Edward S. Boyden, and George Church.
Measuring cation dependent DNA polymerase fidelity landscapes by
deep sequencing.
PLoS ONE, 7(8):e43876, 2012.
|