| A B C D E F G H I J K L M N O P Q R S T U V W X Y Z | |
| backgroundCanvas — Property in class edu.stanford.covertlab.diagram.core.Diagram | |
| backgroundSurface — Property in class edu.stanford.covertlab.diagram.core.Diagram | |
| Bezier — Class in package flash.geom | |
|
Class |
|
| Bezier(start, control, end, isSegment) — Constructor in class flash.geom.Bezier | |
| Create new Bezier object. | |
| Biomolecule — Class in package edu.stanford.covertlab.diagram.core | |
| Biomolecule class. | |
| Biomolecule(diagram:edu.stanford.covertlab.diagram.core:Diagram, myCompartment:edu.stanford.covertlab.diagram.core:CompartmentBase, myStyle:edu.stanford.covertlab.diagram.core:BiomoleculeStyle, x, y, myName, myLabel, myRegulation, myComments, addHistoryAction) — Constructor in class edu.stanford.covertlab.diagram.core.Biomolecule | |
| biomoleculeAxis — Property in class edu.stanford.covertlab.networkanalyzer.manager.ExperimentManager | |
| biomoleculeAxisControl — Property in class edu.stanford.covertlab.networkanalyzer.manager.ExperimentManager | |
| BiomoleculeEvent — Class in package edu.stanford.covertlab.diagram.event | |
| Biomolecule event class. | |
| BiomoleculeEvent(type) — Constructor in class edu.stanford.covertlab.diagram.event.BiomoleculeEvent | |
| BIOMOLECULE_MOVE — Constant static property in class edu.stanford.covertlab.diagram.event.BiomoleculeEvent | |
| biomolecules — Property in class edu.stanford.covertlab.diagram.core.BiomoleculeStyle | |
| biomolecules — Property in class edu.stanford.covertlab.diagram.core.CompartmentBase | |
| biomolecules and edges | |
| biomolecules — Property in class edu.stanford.covertlab.diagram.core.Diagram | |
| biomolecules | |
| biomolecules — Property in class edu.stanford.covertlab.networkanalyzer.manager.NetworkManager | |
| BIOMOLECULE_SHAPES — Static property in class edu.stanford.covertlab.diagram.core.Biomolecule | |
| display | |
| BiomoleculesPanel — Class in package edu.stanford.covertlab.diagram.panel | |
| Form-based user interface for creating, editing, and deleting biomolecules. | |
| BiomoleculesPanel() — Constructor in class edu.stanford.covertlab.diagram.panel.BiomoleculesPanel | |
| BiomoleculeStyle — Class in package edu.stanford.covertlab.diagram.core | |
| Rendering style object for biomolecules. | |
| BiomoleculeStyle(diagram:edu.stanford.covertlab.diagram.core:Diagram, myName, myShape, myColor, myOutline) — Constructor in class edu.stanford.covertlab.diagram.core.BiomoleculeStyle | |
| BIOMOLECULE_STYLE_ADD — Constant static property in class edu.stanford.covertlab.diagram.event.BiomoleculeStyleEvent | |
| BiomoleculeStyleEvent — Class in package edu.stanford.covertlab.diagram.event | |
| Biomolecule style event class. | |
| BiomoleculeStyleEvent(type) — Constructor in class edu.stanford.covertlab.diagram.event.BiomoleculeStyleEvent | |
| BIOMOLECULE_STYLE_REMOVE — Constant static property in class edu.stanford.covertlab.diagram.event.BiomoleculeStyleEvent | |
| biomoleculestyles — Property in class edu.stanford.covertlab.diagram.core.Diagram | |
| biomolecule styles | |
| biomoleculestyles — Property in class edu.stanford.covertlab.networkanalyzer.manager.NetworkManager | |
| BIOMOLECULE_STYLE_UPDATE — Constant static property in class edu.stanford.covertlab.diagram.event.BiomoleculeStyleEvent | |
| BIOMOLECULE_UPDATE — Constant static property in class edu.stanford.covertlab.diagram.event.BiomoleculeEvent | |
| BioPax — Class in package edu.stanford.covertlab.networkanalyzer.ExchangeFormat | |
| Supports BioPax Level 3, Version 0.92 according to the following mapping: Meta Data -> rdf Membranes/Compartments -> cellular location vocabulary Biomolecule Style -> entity reference group vocabulary Biomolecules -> physical entity Regulation -> control See BioPax specificatons | |
| BLUE_YELLOW — Constant static property in class edu.stanford.covertlab.colormap.Colormap | |
| BooleanSimulation — Class in package edu.stanford.covertlab.networkanalyzer.simulation | |
| Generates MATLAB code for a Boolean simulation of the biological network described by a diagram. | |
| borderAlpha — Style in class edu.stanford.covertlab.controls.ImageBorder | |
| borderColor — Style in class edu.stanford.covertlab.controls.ImageBorder | |
| borderThickness — Style in class edu.stanford.covertlab.controls.ImageBorder | |
| bounds — Property in class edu.stanford.covertlab.graphics.renderablerepeater.ColorBar | |
| The tight bounds of this element as represented by a Rectangle object. | |
| bounds — Property in class edu.stanford.covertlab.graphics.renderablerepeater.ColorGrid | |
| bounds — Property in class edu.stanford.covertlab.graphics.renderablerepeater.MembranePhospholipids | |
| The tight bounds of this element as represented by a Rectangle object. | |
| bounds — Property in class flash.geom.Bezier | |
|
Calculates and returns a bounds rectangular of a segment of Bezier curve. Property isSegment=false does not change result of calculations. |
|
| bounds — Property in interface flash.geom.IParametric | |
| Calculate and return bounds rectangle. | |
| bounds — Property in class flash.geom.Line | |
| Return overall rectangle of object. | |
| br.com.stimuli.string — Package | |
| brightness(hex) — Static method in class edu.stanford.covertlab.util.ColorUtils | |
| A B C D E F G H I J K L M N O P Q R S T U V W X Y Z | |