| A B C D E F G H I J K L M N O P Q R S T U V W X Y Z | |
| manageExperimentsWindow — Property in class edu.stanford.covertlab.networkanalyzer.manager.ExperimentManager | |
| ManageExperimentsWindow — Class in package edu.stanford.covertlab.networkanalyzer.window | |
| PopUp window which allows the user to specify experimentally observed channels a biomolecule in the current network correspond to, as well as what the experimentally applied conditions corresponded to in terms of biomolecules. | |
| ManageExperimentsWindow(manager:edu.stanford.covertlab.networkanalyzer.manager:ExperimentManager, diagram:edu.stanford.covertlab.diagram.core:Diagram) — Constructor in class edu.stanford.covertlab.networkanalyzer.window.ManageExperimentsWindow | |
| manageNetworksWindow — Property in class edu.stanford.covertlab.networkanalyzer.manager.NetworkManager | |
| ManageNetworksWindow — Class in package edu.stanford.covertlab.networkanalyzer.window | |
| PopUp window which allows management of networks a user has access to. | |
| ManageNetworksWindow(application, networkManager:edu.stanford.covertlab.networkanalyzer.manager:NetworkManager) — Constructor in class edu.stanford.covertlab.networkanalyzer.window.ManageNetworksWindow | |
| map(b, g, r) — Method in class org.gif.encoder.NeuQuant | |
| MathML — Class in package edu.stanford.covertlab.util | |
| Contains functions for (very limited) conversion between actionscript infix mathematical formulae and MathML. | |
| mathML2infix(mathML) — Static method in class edu.stanford.covertlab.util.MathML | |
| mathML2Prefix(xml) — Static method in class edu.stanford.covertlab.util.MathML | |
| MathMLTest — Class in package edu.stanford.covertlab.util | |
| Test class for MathML class. | |
| MathMLTest() — Constructor in class edu.stanford.covertlab.util.MathMLTest | |
| max(arr) — Static method in class edu.stanford.covertlab.util.ArrayMathUtils | |
| maxAnimationLoops — Property in class edu.stanford.covertlab.diagram.core.Diagram | |
| maxAnimationLoops — Property in class edu.stanford.covertlab.networkanalyzer.manager.NetworkManager | |
| mean(arr) — Static method in class edu.stanford.covertlab.util.ArrayMathUtils | |
| measurement — Property in class edu.stanford.covertlab.networkanalyzer.manager.ExperimentManager | |
| Measurement — Class in package edu.stanford.covertlab.networkanalyzer.viewer.data | |
| measurementAndPerturbation — Property in class edu.stanford.covertlab.networkanalyzer.manager.ExperimentManager | |
| measurementLoaded — Property in class edu.stanford.covertlab.diagram.core.Diagram | |
| measurement/animation | |
| median(arr) — Static method in class edu.stanford.covertlab.util.ArrayMathUtils | |
| Membrane — Class in package edu.stanford.covertlab.diagram.core | |
| Displays a pictorial representation of a membrane. | |
| Membrane(diagram:edu.stanford.covertlab.diagram.core:Diagram, color, myPhospholipidBodyColor, myPhospholipidOutlineColor, width, height, myCurvature, myUpperCompartment:edu.stanford.covertlab.diagram.core:Compartment) — Constructor in class edu.stanford.covertlab.diagram.core.Membrane | |
| membraneCurvature — Property in class edu.stanford.covertlab.diagram.core.Diagram | |
| membraneCurvature — Property in class edu.stanford.covertlab.graphics.renderablerepeater.MembranePhospholipids | |
| membraneCurvature — Property in class edu.stanford.covertlab.networkanalyzer.manager.NetworkManager | |
| membraneHeight — Property in class edu.stanford.covertlab.diagram.core.Diagram | |
| membraneHeight — Property in class edu.stanford.covertlab.graphics.renderablerepeater.MembranePhospholipids | |
| membraneHeight — Property in class edu.stanford.covertlab.networkanalyzer.manager.NetworkManager | |
| MembranePhospholipids — Class in package edu.stanford.covertlab.graphics.renderablerepeater | |
| Draws a curved phospholipid membrane with phospholipid heads and tails. | |
| MembranePhospholipids(membraneWidth, membraneHeight, membraneCurvature, phospholipidHeadSize, phospholipidLayers, phospholipidTailGap) — Constructor in class edu.stanford.covertlab.graphics.renderablerepeater.MembranePhospholipids | |
| membraneWidth — Property in class edu.stanford.covertlab.graphics.renderablerepeater.MembranePhospholipids | |
| min(arr) — Static method in class edu.stanford.covertlab.util.ArrayMathUtils | |
| minCompartmentHeight — Property in class edu.stanford.covertlab.diagram.core.Diagram | |
| minCompartmentHeight — Property in class edu.stanford.covertlab.networkanalyzer.manager.NetworkManager | |
| minimumHeight — Property in class edu.stanford.covertlab.diagram.core.Compartment | |
| minimumHeight — Property in class edu.stanford.covertlab.diagram.core.Membrane | |
| MitochondrionShape — Class in package edu.stanford.covertlab.graphics.shape | |
| Draws a mitochondrion. | |
| MitochondrionShape(size, strokeColor, fillColor) — Constructor in class edu.stanford.covertlab.graphics.shape.MitochondrionShape | |
| modified — Property in class edu.stanford.covertlab.diagram.history.HistoryManager | |
| mouseDownHandler(evt) — Method in class edu.stanford.covertlab.controls.ToolBarButton | |
| mouseDownHandler(evt) — Method in class edu.stanford.covertlab.controls.ToolBarCanvasButton | |
| moveEffect — Property in class edu.stanford.covertlab.diagram.toolbar.ToolBar | |
| moveTo(x, y, graphics) — Method in class edu.stanford.covertlab.graphics.decorators.DashedLineCircleVertexDecorator | |
| MultipagePDFRenderer — Class in package edu.stanford.covertlab.graphics.renderer | |
| Generates a multi-page pdf with a page for each element in an array of bitmap data of frames. | |
| MultipagePDFRenderer() — Constructor in class edu.stanford.covertlab.graphics.renderer.MultipagePDFRenderer | |
| mxml2as(str) — Static method in class edu.stanford.covertlab.util.AS2MXML | |
| myBottomHotspot — Property in class edu.stanford.covertlab.diagram.core.Compartment | |
| myColor — Property in class edu.stanford.covertlab.diagram.core.BiomoleculeStyle | |
| _myColor — Property in class edu.stanford.covertlab.diagram.core.CompartmentBase | |
| myColor — Property in class edu.stanford.covertlab.diagram.core.CompartmentBase | |
| setters/getters | |
| myColor — Property in class edu.stanford.covertlab.diagram.core.CompartmentHotspot | |
| setters/getters | |
| myComments — Property in class edu.stanford.covertlab.diagram.core.Biomolecule | |
| myCompartment — Property in class edu.stanford.covertlab.diagram.core.Biomolecule | |
| myCurvature — Property in class edu.stanford.covertlab.diagram.core.Membrane | |
| myHeight — Property in class edu.stanford.covertlab.diagram.core.Compartment | |
| _myHeight — Property in class edu.stanford.covertlab.diagram.core.CompartmentBase | |
| myHeight — Property in class edu.stanford.covertlab.diagram.core.CompartmentBase | |
| myHeight — Property in class edu.stanford.covertlab.diagram.core.Membrane | |
| myLabel — Property in class edu.stanford.covertlab.diagram.core.Biomolecule | |
| myLowerCompartment — Property in class edu.stanford.covertlab.diagram.core.Compartment | |
| _myLowerCompartment — Property in class edu.stanford.covertlab.diagram.core.CompartmentBase | |
| myLowerCompartment — Property in class edu.stanford.covertlab.diagram.core.CompartmentBase | |
| myLowerCompartment — Property in class edu.stanford.covertlab.diagram.core.Membrane | |
| myMembrane — Property in class edu.stanford.covertlab.diagram.core.Compartment | |
| myMembraneColor — Property in class edu.stanford.covertlab.diagram.core.Compartment | |
| myName — Property in class edu.stanford.covertlab.diagram.core.Biomolecule | |
| myName — Property in class edu.stanford.covertlab.diagram.core.BiomoleculeStyle | |
| display | |
| _myName — Property in class edu.stanford.covertlab.diagram.core.Compartment | |
| myName — Property in class edu.stanford.covertlab.diagram.core.Compartment | |
| myName — Property in class edu.stanford.covertlab.diagram.core.Membrane | |
| myOutline — Property in class edu.stanford.covertlab.diagram.core.BiomoleculeStyle | |
| MyPanelSkin — Class in package com.monkeypatches.blog.kyleq | |
| The PanelSkin class defines the skin for the Panel, TitleWindow, and Alert components. | |
| MyPanelSkin() — Constructor in class com.monkeypatches.blog.kyleq.MyPanelSkin | |
| Constructor | |
| myPhospholipidBodyColor — Property in class edu.stanford.covertlab.diagram.core.Compartment | |
| myPhospholipidBodyColor — Property in class edu.stanford.covertlab.diagram.core.Membrane | |
| myPhospholipidOutlineColor — Property in class edu.stanford.covertlab.diagram.core.Compartment | |
| myPhospholipidOutlineColor — Property in class edu.stanford.covertlab.diagram.core.Membrane | |
| myPosition — Property in class edu.stanford.covertlab.diagram.core.Compartment | |
| _myPosition — Property in class edu.stanford.covertlab.diagram.core.CompartmentBase | |
| myPosition — Property in class edu.stanford.covertlab.diagram.core.CompartmentBase | |
| myPosition — Property in class edu.stanford.covertlab.diagram.core.Membrane | |
| myRegulation — Property in class edu.stanford.covertlab.diagram.core.Biomolecule | |
| myShape — Property in class edu.stanford.covertlab.diagram.core.BiomoleculeStyle | |
| myStyle — Property in class edu.stanford.covertlab.diagram.core.Biomolecule | |
| myTopHotspot — Property in class edu.stanford.covertlab.diagram.core.Compartment | |
| myUpperCompartment — Property in class edu.stanford.covertlab.diagram.core.Compartment | |
| _myUpperCompartment — Property in class edu.stanford.covertlab.diagram.core.CompartmentBase | |
| myUpperCompartment — Property in class edu.stanford.covertlab.diagram.core.CompartmentBase | |
| myUpperCompartment — Property in class edu.stanford.covertlab.diagram.core.Membrane | |
| myValue — Property in class edu.stanford.covertlab.diagram.core.Biomolecule | |
| myWidth — Property in class edu.stanford.covertlab.diagram.core.Compartment | |
| _myWidth — Property in class edu.stanford.covertlab.diagram.core.CompartmentBase | |
| myWidth — Property in class edu.stanford.covertlab.diagram.core.CompartmentBase | |
| myWidth — Property in class edu.stanford.covertlab.diagram.core.Membrane | |
| A B C D E F G H I J K L M N O P Q R S T U V W X Y Z | |