| A B C D E F G H I J K L M N O P Q R S T U V W X Y Z | |
| generateNetwork() — Method in class edu.stanford.covertlab.diagram.core.Diagram | |
| generateSimulation(times, biomolecules, conditions, perturbations, metaData) — Static method in class edu.stanford.covertlab.networkanalyzer.simulation.BooleanSimulation | |
| generateXML(metaData, format) — Method in class edu.stanford.covertlab.networkanalyzer.manager.NetworkManager | |
| get1DDistribution(experimentId, channel, condition, dosage, individual, population, timepoint) — Method in class edu.stanford.covertlab.service.CytoBank | |
| getAnimationTime(idx) — Method in class edu.stanford.covertlab.diagram.core.Diagram | |
| getBiomoleculeByName(str, exactMatch, startIdx) — Method in class edu.stanford.covertlab.diagram.core.Diagram | |
| getBiomoleculesShapeBounds(global) — Method in class edu.stanford.covertlab.diagram.core.CompartmentBase | |
| getBiomoleculeStyleButton(biomoleculeStyle:edu.stanford.covertlab.diagram.core:BiomoleculeStyle) — Method in class edu.stanford.covertlab.diagram.toolbar.NewBiomoleculeToolBar | |
| get index of biomolecule style | |
| getBiomoleculeStyleIndex(biomoleculeStyle:edu.stanford.covertlab.diagram.core:BiomoleculeStyle) — Method in class edu.stanford.covertlab.diagram.toolbar.NewBiomoleculeToolBar | |
| getClosest(fromPoint) — Method in class flash.geom.Bezier | |
|
Вычисляет и возвращает time-итератор точки на кривой,
ближайшей к точке |
|
| getClosest(fromPoint) — Method in interface flash.geom.IParametric | |
| Calculate and return time-interator of point, nearer to given. | |
| getClosest(fromPoint) — Method in class flash.geom.Line | |
| Calculate and return point on line, the nearest at given. | |
| getCompartmentOfBiomolecule(x, y) — Method in class edu.stanford.covertlab.diagram.core.Diagram | |
| getConnection() — Method in class phi.db.Query | |
| Get the current used connection. | |
| getConnection() — Method in interface phi.interfaces.IQuery | |
| Get the current used connection. | |
| getConnections() — Method in class phi.db.Database | |
| Get the number of current open connections. | |
| getConnections() — Method in interface phi.interfaces.IDatabase | |
| Get the number of current open connections. | |
| getDefaultConnectionName() — Method in class phi.db.Database | |
| Get the default connection name | |
| getDefaultConnectionName() — Method in interface phi.interfaces.IDatabase | |
| Get the default connection name | |
| getError() — Method in class phi.db.Query | |
| Get the last SQL error. | |
| getError() — Method in interface phi.interfaces.IQuery | |
| Get the last SQL error. | |
| getExperiment(experimentID) — Method in class edu.stanford.covertlab.service.CytoBank | |
| getExperiments() — Method in class edu.stanford.covertlab.networkanalyzer.manager.ExperimentManager | |
| experiments | |
| getExperiments(openID) — Method in class edu.stanford.covertlab.service.CytoBank | |
| queries | |
| getExperimentStatistics(experimentID, statistic) — Method in class edu.stanford.covertlab.service.CytoBank | |
| getInstance() — Static method in class phi.db.Database | |
Database Singleton Factory method. |
|
| getIsolatedNode() — Method in class edu.stanford.covertlab.diagram.core.CompartmentBase | |
| getLastInsertID() — Method in class phi.db.Query | |
| Get the ID generated for an AUTO_INCREMENT column by the previous INSERT query. | |
| getLastInsertID() — Method in interface phi.interfaces.IQuery | |
| Get the ID generated for an AUTO_INCREMENT column by the previous INSERT query. | |
| getLeafOrder(tree) — Static method in class edu.stanford.covertlab.analysis.HierarchicalClustering | |
| getLeafPositions(tree) — Static method in class edu.stanford.covertlab.analysis.HierarchicalClustering | |
| getMaxDegreeNode() — Method in class edu.stanford.covertlab.diagram.core.CompartmentBase | |
| getMenuAt(index) — Method in class com.rphelan.controls.AcceleratorMenuBar | |
| By overriding getMenuAt, we can ensure that each new Menu uses AcceleratorMenuItemRenderer for its itemRenderer and Label for all of its icons. | |
| getMyEdges() — Method in class edu.stanford.covertlab.diagram.core.Biomolecule | |
| getNetworkDetails(networkid) — Method in class edu.stanford.covertlab.networkanalyzer.manager.NetworkManager | |
| get details of a network | |
| getNetworkDetails(userid, networkid) — Method in class edu.stanford.covertlab.service.NetworkAnalyzer | |
| GET_NETWORK_DETAILS — Constant static property in class edu.stanford.covertlab.networkanalyzer.event.NetworkManagerEvent | |
| GET_NETWORK_DETAILS — Constant static property in class edu.stanford.covertlab.service.NetworkAnalyzer | |
| getNetworkPermissions(id) — Method in class edu.stanford.covertlab.networkanalyzer.manager.NetworkManager | |
| user permissions on available networks | |
| getNetworkPermissions(networkid) — Method in class edu.stanford.covertlab.service.NetworkAnalyzer | |
| GET_NETWORK_PERMISSIONS — Constant static property in class edu.stanford.covertlab.service.NetworkAnalyzer | |
| getObjectStack() — Method in class edu.stanford.covertlab.graphics.renderablerepeater.RenderableRepeater | |
| getPathway(pathway) — Method in class edu.stanford.covertlab.service.KEGG | |
| getPathway(pathway) — Method in class edu.stanford.covertlab.service.Reactome | |
| getPoint(time, point) — Method in class flash.geom.Bezier | |
|
Realization of formula 1 Calculates and returns object Point which representing a point on a Bezier curve, specified by the parameter time. |
|
| getPoint(time, point) — Method in interface flash.geom.IParametric | |
| Calculate and return 2-dimentional point by time-interator. | |
| getPoint(time, point) — Method in class flash.geom.Line | |
| Calculate and return point on line, given by time-iterator. | |
| getPortBounds() — Method in class edu.stanford.covertlab.graphics.shape.ShapeBase | |
| getRecords() — Method in class phi.db.Query | |
Get the records selected with a previous execute() method. |
|
| getRecords() — Method in interface phi.interfaces.IQuery | |
Get the records selected with a previous execute() method. |
|
| getRow() — Method in class phi.db.Query | |
| Get the next row from a previous selected records. | |
| getRow() — Method in interface phi.interfaces.IQuery | |
| Get the next row from a previous selected records. | |
| getSegment(fromTime, toTime) — Method in class flash.geom.Bezier | |
| Вычисляет и возвращает сегмент кривой Безье. | |
| getSegment(fromTime, toTime) — Method in class flash.geom.Line | |
| Return piece of line - segment of line, given by beginning and ending interators. | |
| getSegmentLength(time) — Method in class flash.geom.Bezier | |
| Calculates length of a segment of Bezier curve from a starting point up to a point on a curve which passed in parameter time. | |
| getSegmentLength(time) — Method in interface flash.geom.IParametric | |
Calculate and return length of segment from point start
at point, given by parameter time;
|
|
| getSegmentLength(time) — Method in class flash.geom.Line | |
Return length of segment of line from point start
at point on line, given by time-iterator. |
|
| getShape(shapeName, drawsize, drawstroke, drawfill) — Static method in class edu.stanford.covertlab.diagram.core.Biomolecule | |
| getShapeBounds(global) — Method in class edu.stanford.covertlab.diagram.core.Biomolecule | |
| getTangentAngle(time) — Method in class flash.geom.Bezier | |
| Tangent is line that touches but does not intersect with bezier. | |
| getTimeByDistance(distance) — Method in class flash.geom.Bezier | |
Вычисляет time-итератор точки, находящейся на заданной дистанции
по кривой от точки startДля вычисления равноуделенных последовательностей точек, например для рисования пунктиром, используйте метод getTimesSequence |
|
| getTimeByDistance(distance) — Method in interface flash.geom.IParametric | |
Calculate and return time-interator of point at distance from start. |
|
| getTimeByDistance(distance) — Method in class flash.geom.Line | |
| Calculate and return time-iterator of point that can be found at given distance on line from point start. | |
| getTimesSequence(step, startShift) — Method in class flash.geom.Bezier | |
Вычисляет и возвращает массив time-итераторов точек,
находящихся друг от друга на дистанции по кривой,
заданной параметром step.Если задан параметр startShift, то расчет производится
не от точки start, а от точки на кривой, находящейся на
заданнй этим параметром дистанции.Значение startShift конвертируется в остаток от деления на step. |
|
| getTimesSequence(step, startShift) — Method in interface flash.geom.IParametric | |
| Calculate and return array of time-interators of points with given step. | |
| getTimesSequence(step, startShift) — Method in class flash.geom.Line | |
Calculate and return array of points on line than can be found at distance
given be parameter step.First point of array will be moved from start point at distance, given be parameter startShift. |
|
| GIFEncoder — Class in package org.gif.encoder | |
| GIFRenderer — Class in package edu.stanford.covertlab.graphics.renderer | |
| Generates a gif image of a UIComponent. | |
| GIFRenderer() — Constructor in class edu.stanford.covertlab.graphics.renderer.GIFRenderer | |
| GolgiShape — Class in package edu.stanford.covertlab.graphics.shape | |
| Draws a golgi apparatus. | |
| GolgiShape(size, strokeColor, fillColor) — Constructor in class edu.stanford.covertlab.graphics.shape.GolgiShape | |
| gradientFill — Property in class edu.stanford.covertlab.diagram.core.CompartmentBase | |
| gradientStroke — Property in class edu.stanford.covertlab.diagram.core.CompartmentBase | |
| GraphicPointUtils — Class in package edu.stanford.covertlab.util | |
| Miscellaneous utility functions for rotating, scaling, and reflecting arrays of graphic points | |
| GREEK_CHARACTERS — Constant static property in class edu.stanford.covertlab.util.HTML | |
| GreekKeyboard — Class in package edu.stanford.covertlab.controls | |
| Visual keyboard for entering Greek characters into a text box. | |
| GreekKeyboard(textInput) — Constructor in class edu.stanford.covertlab.controls.GreekKeyboard | |
| GREEN_RED — Constant static property in class edu.stanford.covertlab.colormap.Colormap | |
| GREY — Constant static property in class edu.stanford.covertlab.colormap.Colormap | |
| A B C D E F G H I J K L M N O P Q R S T U V W X Y Z | |