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id — Property in class edu.stanford.covertlab.manager.UserManager
id — Property in class edu.stanford.covertlab.networkanalyzer.manager.NetworkManager
IDatabase — Interface in package phi.interfaces
	The interface definition for a Database object.
IgShape — Class in package edu.stanford.covertlab.graphics.shape
	Draws a Ig receptor.
IgShape(size, strokeColor, fillColor) — Constructor in class edu.stanford.covertlab.graphics.shape.IgShape
IHistory — Interface in package edu.stanford.covertlab.diagram.history
	...
image — Property in class edu.stanford.covertlab.controls.ThumbnailTileListItemRenderer
ImageBorder — Class in package edu.stanford.covertlab.controls
	Image with border.
ImageBorder() — Constructor in class edu.stanford.covertlab.controls.ImageBorder
importNetwork(perturbations, associations) — Method in class edu.stanford.covertlab.networkanalyzer.manager.ExperimentManager
	importing
importNetwork(source) — Method in class edu.stanford.covertlab.networkanalyzer.manager.NetworkManager
importNetworkWindow — Property in class edu.stanford.covertlab.networkanalyzer.manager.NetworkManager
importNetworkWindow — Property in class edu.stanford.covertlab.networkanalyzer.window.ImportNetworkWindow_ThumbnailTileListItemRenderer
ImportNetworkWindow — Class in package edu.stanford.covertlab.networkanalyzer.window
	Provides a window for a user to select a pathway to import from a database.
ImportNetworkWindow(application, networkManager:edu.stanford.covertlab.networkanalyzer.manager:NetworkManager) — Constructor in class edu.stanford.covertlab.networkanalyzer.window.ImportNetworkWindow
ImportNetworkWindow_ThumbnailTileListItemRenderer — Class in package edu.stanford.covertlab.networkanalyzer.window
	Thumbnails in ImportNetworkWindow.
ImportNetworkWindow_ThumbnailTileListItemRenderer() — Constructor in class edu.stanford.covertlab.networkanalyzer.window.ImportNetworkWindow_ThumbnailTileListItemRenderer
ImportNetworkWindow_ThumbnailTileListToolTip — Class in package edu.stanford.covertlab.networkanalyzer.window
	Tooltip for thumbnails in ImportNetworkWindow.
ImportNetworkWindow_ThumbnailTileListToolTip(pathway) — Constructor in class edu.stanford.covertlab.networkanalyzer.window.ImportNetworkWindow_ThumbnailTileListToolTip
individualAxis — Property in class edu.stanford.covertlab.networkanalyzer.manager.ExperimentManager
infix2MathML(infix, numberProperties) — Static method in class edu.stanford.covertlab.util.MathML
infix2Prefix(infix) — Static method in class edu.stanford.covertlab.util.MathML
initialize() — Method in class edu.stanford.covertlab.networkanalyzer.preloader.Preloader
initInstance(start, control, end, isSegment) — Method in class flash.geom.Bezier
initInstance(start, end, isSegment) — Method in class flash.geom.Line
INSERT — Constant static property in class phi.db.Query
internalCentroid — Property in class flash.geom.Bezier
	Gravity center of the figure limited by Bezier curve and line SE.
intersectCubicBezier(x, y, cx, cy, cx1, cy1, x1, y1) — Method in class edu.stanford.covertlab.diagram.core.Membrane
Intersection — Class in package flash.geom
	If crossing exist, then result can be of array of points, or full or brownout coincidence of shapes. If variable isCoincidence=false, it means that shapes are crossing and not equally.
intersectionBezier(target:flash.geom:Bezier) — Method in class flash.geom.Bezier
	Результат вычисления пересечения кривой Безье с другой кривой Безье может дать следующие результаты: - если пересечение отсутствует, возвращается null; - если пересечение произошло в точках (от одной до четырех точек), будет возвращен объект Intersection, и time-итераторы точек пересечения на данной кривой Безье будут находиться в массиве currentTimes.
intersectionBezier(target:flash.geom:Bezier) — Method in interface flash.geom.IParametric
	Calcilate and return intersection with Bezier curve
intersectionBezier(target:flash.geom:Bezier) — Method in class flash.geom.Line
	Calculate and return crossing with Bezier;
intersectionLine(target:flash.geom:Line) — Method in class flash.geom.Bezier
	Результат вычисления пересечения кривой Безье с линией может дать следующие результаты: - если пересечение отсутствует, возвращается null; - если пересечение произошло в одной или двух точках, будет возвращен объект Intersection, и time-итераторы точек пересечения на кривой Безье будут находиться в массиве currentTimes.
intersectionLine(line:flash.geom:Line) — Method in interface flash.geom.IParametric
	Calcilate and return intersection with Line
intersectionLine(targetLine:flash.geom:Line) — Method in class flash.geom.Line
	Calculate and return crossing of two lines.
intersectLine(x, y, x1, y1) — Method in class edu.stanford.covertlab.diagram.core.Membrane
	intersction (used by edges to compute locations of pores)
IonChannelShape — Class in package edu.stanford.covertlab.graphics.shape
	Draws an ion channel.
IonChannelShape(size, strokeColor, fillColor) — Constructor in class edu.stanford.covertlab.graphics.shape.IonChannelShape
IParametric — Interface in package flash.geom
IQuery — Interface in package phi.interfaces
	The interface definition for a Query object.
isCoincidence — Property in class flash.geom.Intersection
	Property, that show type of crossing.
isIntersectionPossible(current, target) — Static method in class flash.geom.Intersection
__isSegment — Property in class flash.geom.Bezier
isSegment — Property in class flash.geom.Bezier
	Defines is the Bezier curve is infinite in both directions or is limited within the bounds of value of iterators from 0 up to 1. The Bezier curve is constructed with using iterator within the bounds from 0 up to 1, however, it can be constructed in any bounds. The Bezier curve constructed from a minus of infinity up to plus of infinity is a parabola. Current value isSegment influence on the results of methods: intersectionBezier intersectionLine getClosest Line.intersectionBezier
isSegment — Property in interface flash.geom.IParametric
	Regime of line constraint.
__isSegment — Property in class flash.geom.Line
isSegment — Property in class flash.geom.Line
	Defined, is line infinite in both side or limited in borders of interators 0-1. Current variable isSegment influense at results of methods: intersectionBezier intersectionLine getClosest Bezier.intersectionLine
isStackEmpty() — Method in class phi.db.Query
isStackEmpty() — Method in interface phi.interfaces.IQuery
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