| A B C D E F G H I J K L M N O P Q R S T U V W X Y Z | |
| undo() — Method in class edu.stanford.covertlab.diagram.history.HistoryManager | |
| undoEnabled — Property in class edu.stanford.covertlab.diagram.history.HistoryManager | |
| undoHistoryAction(action, data) — Method in class edu.stanford.covertlab.diagram.core.Biomolecule | |
| undo/redo | |
| undoHistoryAction(action, data) — Method in class edu.stanford.covertlab.diagram.core.BiomoleculeStyle | |
| undo, redo | |
| undoHistoryAction(action, data) — Method in class edu.stanford.covertlab.diagram.core.Compartment | |
| undo/redo | |
| undoHistoryAction(action, data) — Method in class edu.stanford.covertlab.diagram.core.Diagram | |
| redo, undo | |
| undoHistoryAction(action, data) — Method in interface edu.stanford.covertlab.diagram.history.IHistory | |
| unescapeXML(text) — Static method in class edu.stanford.covertlab.util.HTML | |
| update(myName, myLabel, myRegulation, myCompartment:edu.stanford.covertlab.diagram.core:CompartmentBase, myStyle:edu.stanford.covertlab.diagram.core:BiomoleculeStyle, myComments, addHistoryAction) — Method in class edu.stanford.covertlab.diagram.core.Biomolecule | |
| update(myName, myShape, myColor, myOutline, addHistoryAction) — Method in class edu.stanford.covertlab.diagram.core.BiomoleculeStyle | |
| update(myName, myColor, myMembraneColor, myPhospholipidBodyColor, myPhospholipidOutlineColor, addUndoAction) — Method in class edu.stanford.covertlab.diagram.core.Compartment | |
| update() — Method in class edu.stanford.covertlab.networkanalyzer.window.ConfigureAxesWindow | |
| update data providers | |
| update() — Method in class edu.stanford.covertlab.networkanalyzer.window.HeatmapWindow | |
| heatmap | |
| UPDATE — Constant static property in class phi.db.Query | |
| updateAdvancedOptions(diagramWidth, diagramHeight, showPores, poreFillColor, poreStrokeColor, ranksep, nodesep, maxAnimationLoops, animationFrameRate, exportShowBiomoleculeSelectedHandles, exportColorBiomoleculesByValue, exportAnimationFrameRate, exportMaxAnimationLoops, addHistoryAction) — Method in class edu.stanford.covertlab.diagram.core.Diagram | |
| advanced options | |
| updateAnimationTween(value) — Method in class edu.stanford.covertlab.diagram.core.Diagram | |
| updateBiomolecule(biomolecule:edu.stanford.covertlab.diagram.core:Biomolecule) — Method in class edu.stanford.covertlab.diagram.core.Diagram | |
| updateBiomoleculeStyle(biomoleculeStyle:edu.stanford.covertlab.diagram.core:BiomoleculeStyle) — Method in class edu.stanford.covertlab.diagram.core.Diagram | |
| updateCompartment(tweenTime) — Method in class edu.stanford.covertlab.diagram.core.Biomolecule | |
| updateCompartment(compartment:edu.stanford.covertlab.diagram.core:Compartment) — Method in class edu.stanford.covertlab.diagram.core.Diagram | |
| updateDisplayList(w, h) — Method in class edu.stanford.covertlab.controls.ImageBorder | |
| updateDisplayList(unscaledWidth, unscaledHeight) — Method in class edu.stanford.covertlab.diagram.overview.Overview | |
| refresh mirror of diagram | |
| updateDisplayList(unscaledWidth, unscaledHeight) — Method in class edu.stanford.covertlab.diagram.toolbar.ToolBar | |
| updateEdge(event:edu.stanford.covertlab.diagram.event:BiomoleculeEvent) — Method in class edu.stanford.covertlab.diagram.core.Edge | |
| display | |
| updateExperimentAssociations(experimentId, associations, channels) — Method in class edu.stanford.covertlab.networkanalyzer.manager.ExperimentManager | |
| updateExperimentPerturbations(experimentId, perturbations, conditions) — Method in class edu.stanford.covertlab.networkanalyzer.manager.ExperimentManager | |
| updateExperimentPerturbationsAndAssociations(experimentId, perturbations, conditions, associations, channels) — Method in class edu.stanford.covertlab.networkanalyzer.manager.ExperimentManager | |
| updateFloatingStatus(event) — Method in class edu.stanford.covertlab.diagram.toolbar.ToolBar | |
| updateIncomingEdges() — Method in class edu.stanford.covertlab.diagram.core.Biomolecule | |
| updateNetwork(networkid, userid, network, preview) — Method in class edu.stanford.covertlab.service.NetworkAnalyzer | |
| UPDATE_NETWORK — Constant static property in class edu.stanford.covertlab.service.NetworkAnalyzer | |
| updateNetworkData(networkid, autosave) — Method in class edu.stanford.covertlab.networkanalyzer.manager.NetworkManager | |
| updateNetworkDataQueryHandler(event) — Method in class edu.stanford.covertlab.networkanalyzer.manager.NetworkManager | |
| updateProperties(chartType, xAxis, yAxis, chartData, colormap, colormapScale, axisFontSize, tickFontSize, createToolTip) — Method in class edu.stanford.covertlab.chart.Chart | |
| setters, getters | |
| updateProperties(x, y, width, height, rows, cols, colors) — Method in class edu.stanford.covertlab.graphics.renderablerepeater.ColorGrid | |
| updateStyle(event:edu.stanford.covertlab.diagram.event:BiomoleculeStyleEvent) — Method in class edu.stanford.covertlab.diagram.toolbar.NewBiomoleculeToolBar | |
| userAccountWindow — Property in class edu.stanford.covertlab.manager.UserManager | |
| UserAccountWindow — Class in package edu.stanford.covertlab.window | |
| PopUp window which allows to review and edit their user profile (name, email, affiliation, PI, etc.). | |
| UserAccountWindow(application, userManager:edu.stanford.covertlab.manager:UserManager) — Constructor in class edu.stanford.covertlab.window.UserAccountWindow | |
| USER_CHECK_TIMEOUT — Constant static property in class edu.stanford.covertlab.event.UserManagerEvent | |
| userData — Property in class edu.stanford.covertlab.event.UserManagerEvent | |
| USER_ENDSESSION — Constant static property in class edu.stanford.covertlab.event.UserManagerEvent | |
| USER_INTERACTION — Constant static property in class edu.stanford.covertlab.diagram.event.DiagramEvent | |
| USER_LOGIN — Constant static property in class edu.stanford.covertlab.event.UserManagerEvent | |
| USER_LOGOFF — Constant static property in class edu.stanford.covertlab.event.UserManagerEvent | |
| UserManager — Class in package edu.stanford.covertlab.manager | |
| Implements user security and manages user id and profile. | |
| UserManager(application, db:phi.interfaces:IDatabase) — Constructor in class edu.stanford.covertlab.manager.UserManager | |
| UserManagerEvent — Class in package edu.stanford.covertlab.event | |
| Event class for UserManager. | |
| UserManagerEvent(type, timedOut, userData, oldUserData) — Constructor in class edu.stanford.covertlab.event.UserManagerEvent | |
| _username — Property in class phi.db.ConnectionData | |
| username — Property in class phi.db.ConnectionData | |
| USER_SAVE — Constant static property in class edu.stanford.covertlab.event.UserManagerEvent | |
| USER_UPDATE — Constant static property in class edu.stanford.covertlab.event.UserManagerEvent | |
| A B C D E F G H I J K L M N O P Q R S T U V W X Y Z | |